Twenty years of plant genome sequencing: achievements and challenges

Y Sun, L Shang, QH Zhu, L Fan, L Guo - Trends in Plant Science, 2022 - cell.com
Publication of the complete genome sequence of Arabidopsis thaliana, the first plant
reference genome, in December 2000 heralded the beginning of the plant genome era …

Abscisic acid dynamics, signaling, and functions in plants

K Chen, GJ Li, RA Bressan, CP Song… - Journal of integrative …, 2020 - Wiley Online Library
Abscisic acid (ABA) is an important phytohormone regulating plant growth, development,
and stress responses. It has an essential role in multiple physiological processes of plants …

BRAKER2: automatic eukaryotic genome annotation with GeneMark-EP+ and AUGUSTUS supported by a protein database

T Brůna, KJ Hoff, A Lomsadze, M Stanke… - NAR genomics and …, 2021 - academic.oup.com
The task of eukaryotic genome annotation remains challenging. Only a few genomes could
serve as standards of annotation achieved through a tremendous investment of human …

[HTML][HTML] Seaweed phenolics: From extraction to applications

J Cotas, A Leandro, P Monteiro, D Pacheco… - Marine drugs, 2020 - mdpi.com
Seaweeds have attracted high interest in recent years due to their chemical and bioactive
properties to find new molecules with valuable applications for humankind. Phenolic …

[HTML][HTML] One thousand plant transcriptomes and the phylogenomics of green plants

Nature, 2019 - nature.com
Green plants (Viridiplantae) include around 450,000–500,000 species, of great diversity and
have important roles in terrestrial and aquatic ecosystems. Here, as part of the One …

Plant evolution driven by interactions with symbiotic and pathogenic microbes

PM Delaux, S Schornack - Science, 2021 - science.org
BACKGROUND Microbial interactions have shaped plant diversity in terrestrial ecosystems.
By forming mutually beneficial symbioses, microbes helped plants colonize land more than …

Origin and early evolution of the plant terpene synthase family

Q Jia, R Brown, TG Köllner, J Fu… - Proceedings of the …, 2022 - National Acad Sciences
As a midsized gene family conserved more by lineage than function, the typical plant
terpene synthases (TPSs) could be a valuable tool to examine plant evolution. TPSs are …

Auxin response factors are keys to the many auxin doors

C Cancé, R Martin‐Arevalillo, K Boubekeur… - New …, 2022 - Wiley Online Library
In plants, most developmental programs depend on the action of auxin. The best described
model of the auxin signaling pathway, which explains most, but not all, of the auxin …

[HTML][HTML] The origin and evolution of plant flavonoid metabolism

K Yonekura-Sakakibara, Y Higashi… - Frontiers in plant …, 2019 - frontiersin.org
During their evolution, plants have acquired the ability to produce a huge variety of
compounds. Unlike the specialized metabolites that accumulate in limited numbers of …

[HTML][HTML] Genomes of subaerial Zygnematophyceae provide insights into land plant evolution

S Cheng, W Xian, Y Fu, B Marin, J Keller, T Wu, W Sun… - Cell, 2019 - cell.com
The transition to a terrestrial environment, termed terrestrialization, is generally regarded as
a pivotal event in the evolution and diversification of the land plant flora that changed the …