Fungal identification using molecular tools: a primer for the natural products research community

HA Raja, AN Miller, CJ Pearce… - Journal of natural …, 2017 - ACS Publications
Fungi are morphologically, ecologically, metabolically, and phylogenetically diverse. They
are known to produce numerous bioactive molecules, which makes them very useful for …

The genomes of three uneven siblings: footprints of the lifestyles of three Trichoderma species

M Schmoll, C Dattenböck… - Microbiology and …, 2016 - Am Soc Microbiol
The genus Trichoderma contains fungi with high relevance for humans, with applications in
enzyme production for plant cell wall degradation and use in biocontrol. Here, we provide a …

[HTML][HTML] Protective effects of different Bacteroides vulgatus strains against lipopolysaccharide-induced acute intestinal injury, and their underlying functional genes

C Wang, Y Xiao, L Yu, F Tian, J Zhao, H Zhang… - Journal of Advanced …, 2022 - Elsevier
Abstract Introduction The roles of Bacteroides species in alleviating inflammation and
intestinal injury has been widely demonstrated, but few studies have focused on the roles of …

Chromosomal-level assembly of yellow catfish genome using third-generation DNA sequencing and Hi-C analysis

G Gong, C Dan, S Xiao, W Guo, P Huang, Y Xiong… - …, 2018 - academic.oup.com
Abstract Background The yellow catfish, Pelteobagrus fulvidraco, belonging to the
Siluriformes order, is an economically important freshwater aquaculture fish species in Asia …

High variability of mitochondrial gene order among fungi

G Aguileta, DM de Vienne, ON Ross… - Genome biology and …, 2014 - academic.oup.com
From their origin as an early alpha proteobacterial endosymbiont to their current state as
cellular organelles, large-scale genomic reorganization has taken place in the mitochondria …

[HTML][HTML] The Chinese mitten crab genome provides insights into adaptive plasticity and developmental regulation

Z Cui, Y Liu, J Yuan, X Zhang, T Ventura, KY Ma… - Nature …, 2021 - nature.com
The infraorder Brachyura (true or short-tailed crabs) represents a successful group of marine
invertebrates yet with limited genomic resources. Here we report a chromosome-anchored …

[HTML][HTML] Extensive genomic rearrangements mediated by repetitive sequences in plastomes of Medicago and its relatives

S Wu, J Chen, Y Li, A Liu, A Li, M Yin, N Shrestha… - BMC Plant …, 2021 - Springer
Background Although plastomes are highly conserved with respect to gene content and
order in most photosynthetic angiosperms, extensive genomic rearrangements have been …

[HTML][HTML] EggLib: processing, analysis and simulation tools for population genetics and genomics

S De Mita, M Siol - BMC genetics, 2012 - Springer
Background With the considerable growth of available nucleotide sequence data over the
last decade, integrated and flexible analytical tools have become a necessity. In particular …

[HTML][HTML] Population genomic analysis and de novo assembly reveal the origin of weedy rice as an evolutionary game

J Sun, D Ma, L Tang, M Zhao, G Zhang, W Wang… - Molecular plant, 2019 - cell.com
Crop weediness, especially that of weedy rice (Oryza sativa f. spontanea), remains
mysterious. Weedy rice possesses robust ecological adaptability; however, how this strain …

[HTML][HTML] Phylogenetic analysis of SARS-CoV-2 in the Boston area highlights the role of recurrent importation and superspreading events.

JE Lemieux, KJ Siddle, BM Shaw, C Loreth… - MedRxiv, 2020 - ncbi.nlm.nih.gov
SARS-CoV-2 has caused a severe, ongoing outbreak of COVID-19 in Massachusetts with
111,070 confirmed cases and 8,433 deaths as of August 1, 2020. To investigate the …