Theory of protein folding: the energy landscape perspective

JN Onuchic, Z Luthey-Schulten… - Annual review of …, 1997 - annualreviews.org
▪ Abstract The energy landscape theory of protein folding is a statistical description of a
protein's potential surface. It assumes that folding occurs through organizing an ensemble of …

From Levinthal to pathways to funnels

KA Dill, HS Chan - Nature structural biology, 1997 - nature.com
From Levinthalto pathways to funnels Page 1 TS 9 1997 Nature Publishing Group http://www.nature.com/nsmb
perspective From Levinthalto pathways to funnels Ken A. Dill and Hue Sun Chan A new …

Native contacts determine protein folding mechanisms in atomistic simulations

RB Best, G Hummer, WA Eaton - Proceedings of the …, 2013 - National Acad Sciences
The recent availability of long equilibrium simulations of protein folding in atomistic detail for
more than 10 proteins allows us to identify the key interactions driving folding. We find that …

Funnels, pathways, and the energy landscape of protein folding: a synthesis

JD Bryngelson, JN Onuchic, ND Socci… - Proteins: Structure …, 1995 - Wiley Online Library
The understanding, and even the description of protein folding is impeded by the complexity
of the process. Much of this complexity can be described and understood by taking a …

A field guide to foldamers

DJ Hill, MJ Mio, RB Prince, TS Hughes… - Chemical …, 2001 - ACS Publications
The breadth of structure and function displayed by the molecules of biology is remarkable.
Considering that there are only three major biopolymer backbones (proteins, ribonucleic …

Protein folding funnels: a kinetic approach to the sequence-structure relationship.

PE Leopold, M Montal… - Proceedings of the …, 1992 - National Acad Sciences
A lattice model of protein folding is developed to distinguish between amino acid sequences
that do and do not fold into unique conformations. Although Monte Carlo simulations provide …

Principles of protein folding—a perspective from simple exact models

KA Dill, S Bromberg, K Yue, HS Chan… - Protein …, 1995 - Wiley Online Library
General principles of protein structure, stability, and folding kinetics have recently been
explored in computer simulations of simple exact lattice models. These models represent …

Molten globule and protein folding

OB Ptitsyn - Advances in protein chemistry, 1995 - Elsevier
Publisher Summary This chapter describes the present state of the studies of the molten
globule state and its role in protein folding and physiological processes. Recent data on the …

Predicting slow structural transitions in macromolecular systems: Conformational flooding

H Grubmüller - Physical Review E, 1995 - APS
We present a method to predict complex structural (conformational) transitions in irregular or
disordered macromolecular systems, such as proteins or glasses, at the atomic level. Our …

How does a protein fold?

AS˘ ali, E Shakhnovich, M Karplus - nature, 1994 - nature.com
THE number of all possible conformations of a polypeptide chain is too large to be sampled
exhaustively. Nevertheless, protein sequences do fold into unique native states in seconds …