Polyproline-II helix in proteins: structure and function
AA Adzhubei, MJE Sternberg, AA Makarov - Journal of molecular biology, 2013 - Elsevier
The poly-l-proline type II (PPII) helix in recent years has emerged clearly as a structural class
not only of fibrillar proteins (in collagen, PPII is a dominant conformation) but also of the …
not only of fibrillar proteins (in collagen, PPII is a dominant conformation) but also of the …
Proline: the distribution, frequency, positioning, and common functional roles of proline and polyproline sequences in the human proteome
AA Morgan, E Rubenstein - PloS one, 2013 - journals.plos.org
Proline is an anomalous amino acid. Its nitrogen atom is covalently locked within a ring, thus
it is the only proteinogenic amino acid with a constrained phi angle. Sequences of three …
it is the only proteinogenic amino acid with a constrained phi angle. Sequences of three …
Membrane-associated mucins of the ocular surface: New genes, new protein functions and new biological roles in human and mouse
ME Fini, S Jeong, H Gong, R Martinez-Carrasco… - Progress in retinal and …, 2020 - Elsevier
The mucosal glycocalyx of the ocular surface constitutes the point of interaction between the
tear film and the apical epithelial cells. Membrane-associated mucins (MAMs) are the …
tear film and the apical epithelial cells. Membrane-associated mucins (MAMs) are the …
Force field effects in simulations of flexible peptides with varying polyproline II propensity
Five peptides previously suggested to possess polyproline II (PPII) structure have here been
investigated by using atomistic molecular dynamics simulations to compare how well four …
investigated by using atomistic molecular dynamics simulations to compare how well four …
[HTML][HTML] Extension of the classical classification of β-turns
AG de Brevern - Scientific reports, 2016 - nature.com
The functional properties of a protein primarily depend on its three-dimensional (3D)
structure. These properties have classically been assigned, visualized and analysed on the …
structure. These properties have classically been assigned, visualized and analysed on the …
Position β57 of IAg7 controls early anti-insulin responses in NOD mice, linking an MHC susceptibility allele to type 1 diabetes onset
L Gioia, M Holt, A Costanzo, S Sharma, B Abe… - Science …, 2019 - science.org
The class II region of the major histocompatibility complex (MHC) locus is the main
contributor to the genetic susceptibility to type 1 diabetes (T1D). The loss of an aspartic acid …
contributor to the genetic susceptibility to type 1 diabetes (T1D). The loss of an aspartic acid …
Molecular dynamics simulations of phosphorylated intrinsically disordered proteins: a force field comparison
E Rieloff, M Skepö - International journal of molecular sciences, 2021 - mdpi.com
Phosphorylation is a common post-translational modification among intrinsically disordered
proteins and regions, which helps regulate function by changing the protein conformations …
proteins and regions, which helps regulate function by changing the protein conformations …
An asymmetric dimer as the basic subunit in Alzheimer's disease amyloid β fibrils
JM Lopez del Amo, M Schmidt, U Fink… - Angewandte Chemie …, 2012 - Wiley Online Library
Aggregation of monomeric amyloid β peptides (Aβ) into soluble oligomers and insoluble
fibrils is one of the major pathological hallmarks of Alzheimer s disease (AD).[1] In the past …
fibrils is one of the major pathological hallmarks of Alzheimer s disease (AD).[1] In the past …
Predicting the affinity of peptides to major histocompatibility complex class II by scoring molecular dynamics simulations
Predicting the binding affinity of peptides able to interact with major histocompatibility
complex (MHC) molecules is a priority for researchers working in the identification of novel …
complex (MHC) molecules is a priority for researchers working in the identification of novel …
Engineering protein stability with atomic precision in a monomeric miniprotein
EG Baker, C Williams, KL Hudson, GJ Bartlett… - Nature chemical …, 2017 - nature.com
Miniproteins simplify the protein-folding problem, allowing the dissection of forces that
stabilize protein structures. Here we describe PPα-Tyr, a designed peptide comprising an α …
stabilize protein structures. Here we describe PPα-Tyr, a designed peptide comprising an α …