R loops: from transcription byproducts to threats to genome stability
A Aguilera, T García-Muse - Molecular cell, 2012 - cell.com
RNA: DNA hybrid structures known as R loops were thought to be rare byproducts of
transcription. In the last decade, however, accumulating evidence has pointed to a new view …
transcription. In the last decade, however, accumulating evidence has pointed to a new view …
Somatic mitochondrial DNA mutations in mammalian aging
NG Larsson - Annual review of biochemistry, 2010 - annualreviews.org
Mitochondrial dysfunction is heavily implicated in the multifactorial aging process. Aging
humans have increased levels of somatic mtDNA mutations that tend to undergo clonal …
humans have increased levels of somatic mtDNA mutations that tend to undergo clonal …
A trailing ribosome speeds up RNA polymerase at the expense of transcript fidelity via force and allostery
In prokaryotes, translation can occur on mRNA that is being transcribed in a process called
coupling. How the ribosome affects the RNA polymerase (RNAP) during coupling is not well …
coupling. How the ribosome affects the RNA polymerase (RNAP) during coupling is not well …
Functionally uncoupled transcription–translation in Bacillus subtilis
Tight coupling of transcription and translation is considered a defining feature of bacterial
gene expression,. The pioneering ribosome can both physically associate and kinetically …
gene expression,. The pioneering ribosome can both physically associate and kinetically …
Real-time kinetics of gene activity in individual bacteria
Protein levels have been shown to vary substantially between individual cells in clonal
populations. In prokaryotes, the contribution to such fluctuations from the inherent …
populations. In prokaryotes, the contribution to such fluctuations from the inherent …
The contribution of co-transcriptional RNA: DNA hybrid structures to DNA damage and genome instability
S Hamperl, KA Cimprich - DNA repair, 2014 - Elsevier
Accurate DNA replication and DNA repair are crucial for the maintenance of genome
stability, and it is generally accepted that failure of these processes is a major source of DNA …
stability, and it is generally accepted that failure of these processes is a major source of DNA …
Proteome organization in a genome-reduced bacterium
The genome of Mycoplasma pneumoniae is among the smallest found in self-replicating
organisms. To study the basic principles of bacterial proteome organization, we used …
organisms. To study the basic principles of bacterial proteome organization, we used …
Interpreting Expression Data with Metabolic Flux Models: Predicting Mycobacterium tuberculosis Mycolic Acid Production
Metabolism is central to cell physiology, and metabolic disturbances play a role in numerous
disease states. Despite its importance, the ability to study metabolism at a global scale using …
disease states. Despite its importance, the ability to study metabolism at a global scale using …
Transcription as a source of genome instability
N Kim, S Jinks-Robertson - Nature Reviews Genetics, 2012 - nature.com
Alterations in genome sequence and structure contribute to somatic disease, affect the
fitness of subsequent generations and drive evolutionary processes. The crucial roles of …
fitness of subsequent generations and drive evolutionary processes. The crucial roles of …
Toward an orthogonal central dogma
The central dogma processes of DNA replication, transcription, and translation are
responsible for the maintenance and expression of every gene in an organism. An …
responsible for the maintenance and expression of every gene in an organism. An …