The peptidyl transferase center: a window to the past

MR Tirumalai, M Rivas, Q Tran… - … and Molecular Biology …, 2021 - Am Soc Microbiol
SUMMARY In his 2001 article,“Translation: in retrospect and prospect,” the late Carl Woese
made a prescient observation that there was a need for the then-current view of translation …

Amides in nature and biocatalysis

J Pitzer, K Steiner - Journal of biotechnology, 2016 - Elsevier
Amides are widespread in biologically active compounds with a broad range of applications
in biotechnology, agriculture and medicine. Therefore, as alternative to chemical synthesis …

A proton wire to couple aminoacyl-tRNA accommodation and peptide-bond formation on the ribosome

YS Polikanov, TA Steitz, CA Innis - Nature structural & molecular …, 2014 - nature.com
During peptide-bond formation on the ribosome, the α-amine of an aminoacyl-tRNA attacks
the ester carbonyl carbon of a peptidyl-tRNA to yield a peptide lengthened by one amino …

Evolution of the ribosome at atomic resolution

AS Petrov, CR Bernier, C Hsiao… - Proceedings of the …, 2014 - National Acad Sciences
The origins and evolution of the ribosome, 3–4 billion years ago, remain imprinted in the
biochemistry of extant life and in the structure of the ribosome. Processes of ribosomal RNA …

Oxyanion Hole Stabilization by C–H··· O Interaction in a Transition State A Three-Point Interaction Model for Cinchona Alkaloid-Catalyzed Asymmetric Methanolysis …

H Yang, MW Wong - Journal of the American Chemical Society, 2013 - ACS Publications
Oxyanion holes are commonly found in many enzyme structures. They are crucial for the
stabilization of high-energy oxyanion intermediates or transition states through hydrogen …

The ribosome challenge to the RNA world

JC Bowman, NV Hud, LD Williams - Journal of Molecular Evolution, 2015 - Springer
An RNA World that predated the modern world of polypeptide and polynucleotide is one of
the most widely accepted models in origin of life research. In this model, the translation …

Protein synthesis with ribosomes selected for the incorporation of β-amino acids

R Maini, SR Chowdhury, LM Dedkova, B Roy… - Biochemistry, 2015 - ACS Publications
In an earlier study, β3-puromycin was used for the selection of modified ribosomes, which
were utilized for the incorporation of five different β-amino acids into Escherichia coli …

The ribosome as a versatile catalyst: reactions at the peptidyl transferase center

MV Rodnina - Current Opinion in Structural Biology, 2013 - Elsevier
Highlights•The ribosome's active site catalyzes diverse chemical reactions.•Peptide bond
formation proceeds through a fully concerted proton shuttle mechanism.•The transition state …

A tale of water molecules in the ribosomal peptidyl transferase reaction

Q Wang, H Su - Biochemistry, 2022 - ACS Publications
The peptidyl transferase center (PTC) in the large subunit of the ribosome plays a critical
role in protein synthesis by catalyzing the formation of peptide bonds with an astounding …

Quantum-mechanical study on the mechanism of peptide bond formation in the ribosome

C Acosta-Silva, J Bertran, V Branchadell… - Journal of the American …, 2012 - ACS Publications
Ribosomes transform the genetic information encoded within genes into proteins. In recent
years, there has been much progress in the study of this complex molecular machine, but …