Cell-signalling dynamics in time and space
BN Kholodenko - Nature reviews Molecular cell biology, 2006 - nature.com
The specificity of cellular responses to receptor stimulation is encoded by the spatial and
temporal dynamics of downstream signalling networks. Temporal dynamics are coupled to …
temporal dynamics of downstream signalling networks. Temporal dynamics are coupled to …
Proteins, drug targets and the mechanisms they control: the simple truth about complex networks
Realizing the promise of molecularly targeted inhibitors for cancer therapy will require a new
level of knowledge about how a drug target is wired into the control circuitry of a complex …
level of knowledge about how a drug target is wired into the control circuitry of a complex …
A hidden oncogenic positive feedback loop caused by crosstalk between Wnt and ERK pathways
The Wnt and the extracellular signal regulated-kinase (ERK) pathways are both involved in
the pathogenesis of various kinds of cancers. Recently, the existence of crosstalk between …
the pathogenesis of various kinds of cancers. Recently, the existence of crosstalk between …
[HTML][HTML] The control of the controller: molecular mechanisms for robust perfect adaptation and temperature compensation
XY Ni, T Drengstig, P Ruoff - Biophysical journal, 2009 - cell.com
Organisms have the property to adapt to a changing environment and keep certain
components within a cell regulated at the same level (homeostasis)." Perfect adaptation" …
components within a cell regulated at the same level (homeostasis)." Perfect adaptation" …
A hidden feedback in signaling cascades is revealed
AC Ventura, JA Sepulchre… - PLoS computational …, 2008 - journals.plos.org
Cycles involving covalent modification of proteins are key components of the intracellular
signaling machinery. Each cycle is comprised of two interconvertable forms of a particular …
signaling machinery. Each cycle is comprised of two interconvertable forms of a particular …
Network modeling of signal transduction: establishing the global view
HA Kestler, C Wawra, B Kracher, M Kühl - Bioessays, 2008 - Wiley Online Library
Embryonic development and adult tissue homeostasis are controlled through activation of
intracellular signal transduction pathways by extracellular growth factors. In the past, signal …
intracellular signal transduction pathways by extracellular growth factors. In the past, signal …
Monitoring of transcriptome and proteome profiles to investigate the cellular response of E. coli towards recombinant protein expression under defined chemostat …
K Dürrschmid, H Reischer, W Schmidt-Heck… - Journal of …, 2008 - Elsevier
The use of strong promoter systems for recombinant protein production generates high
product yields, but also overburdens the host cell metabolism and compromises production …
product yields, but also overburdens the host cell metabolism and compromises production …
Deterministic modelling and stochastic simulation of biochemical pathways using MATLAB
The analysis of complex biochemical networks is conducted in two popular conceptual
frameworks for modelling. The deterministic approach requires the solution of ordinary …
frameworks for modelling. The deterministic approach requires the solution of ordinary …
Approximations and their consequences for dynamic modelling of signal transduction pathways
Signal transduction is the process by which the cell converts one kind of signal or stimulus
into another. This involves a sequence of biochemical reactions, carried out by proteins. The …
into another. This involves a sequence of biochemical reactions, carried out by proteins. The …
Family tree of Markov models in systems biology
M Ullah, O Wolkenhauer - IET systems biology, 2007 - IET
Motivated by applications in systems biology, a probabilistic framework based on Markov
processes is proposed to represent intracellular processes. The formal relationships …
processes is proposed to represent intracellular processes. The formal relationships …