Cell-signalling dynamics in time and space

BN Kholodenko - Nature reviews Molecular cell biology, 2006 - nature.com
The specificity of cellular responses to receptor stimulation is encoded by the spatial and
temporal dynamics of downstream signalling networks. Temporal dynamics are coupled to …

Proteins, drug targets and the mechanisms they control: the simple truth about complex networks

RP Araujo, LA Liotta, EF Petricoin - Nature reviews Drug discovery, 2007 - nature.com
Realizing the promise of molecularly targeted inhibitors for cancer therapy will require a new
level of knowledge about how a drug target is wired into the control circuitry of a complex …

A hidden oncogenic positive feedback loop caused by crosstalk between Wnt and ERK pathways

D Kim, O Rath, W Kolch, KH Cho - Oncogene, 2007 - nature.com
The Wnt and the extracellular signal regulated-kinase (ERK) pathways are both involved in
the pathogenesis of various kinds of cancers. Recently, the existence of crosstalk between …

[HTML][HTML] The control of the controller: molecular mechanisms for robust perfect adaptation and temperature compensation

XY Ni, T Drengstig, P Ruoff - Biophysical journal, 2009 - cell.com
Organisms have the property to adapt to a changing environment and keep certain
components within a cell regulated at the same level (homeostasis)." Perfect adaptation" …

A hidden feedback in signaling cascades is revealed

AC Ventura, JA Sepulchre… - PLoS computational …, 2008 - journals.plos.org
Cycles involving covalent modification of proteins are key components of the intracellular
signaling machinery. Each cycle is comprised of two interconvertable forms of a particular …

Network modeling of signal transduction: establishing the global view

HA Kestler, C Wawra, B Kracher, M Kühl - Bioessays, 2008 - Wiley Online Library
Embryonic development and adult tissue homeostasis are controlled through activation of
intracellular signal transduction pathways by extracellular growth factors. In the past, signal …

Monitoring of transcriptome and proteome profiles to investigate the cellular response of E. coli towards recombinant protein expression under defined chemostat …

K Dürrschmid, H Reischer, W Schmidt-Heck… - Journal of …, 2008 - Elsevier
The use of strong promoter systems for recombinant protein production generates high
product yields, but also overburdens the host cell metabolism and compromises production …

Deterministic modelling and stochastic simulation of biochemical pathways using MATLAB

M Ullah, H Schmidt, KH Cho, O Wolkenhauer - IEE Proceedings-Systems …, 2006 - IET
The analysis of complex biochemical networks is conducted in two popular conceptual
frameworks for modelling. The deterministic approach requires the solution of ordinary …

Approximations and their consequences for dynamic modelling of signal transduction pathways

T Millat, E Bullinger, J Rohwer, O Wolkenhauer - Mathematical biosciences, 2007 - Elsevier
Signal transduction is the process by which the cell converts one kind of signal or stimulus
into another. This involves a sequence of biochemical reactions, carried out by proteins. The …

Family tree of Markov models in systems biology

M Ullah, O Wolkenhauer - IET systems biology, 2007 - IET
Motivated by applications in systems biology, a probabilistic framework based on Markov
processes is proposed to represent intracellular processes. The formal relationships …