Designing cell function: assembly of synthetic gene circuits for cell biology applications

M Xie, M Fussenegger - Nature Reviews Molecular Cell Biology, 2018 - nature.com
Synthetic biology is the discipline of engineering application-driven biological functionalities
that were not evolved by nature. Early breakthroughs of cell engineering, which were based …

Synthetic biology: an emerging engineering discipline

AA Cheng, TK Lu - Annual review of biomedical engineering, 2012 - annualreviews.org
Over the past decade, synthetic biology has emerged as an engineering discipline for
biological systems. Compared with other substrates, biology poses a unique set of …

Synthetic protein switches: design principles and applications

V Stein, K Alexandrov - Trends in biotechnology, 2015 - cell.com
Protein switches are ubiquitous in biological signal transduction systems, enabling cells to
sense and respond to a variety of molecular queues in a rapid, specific, and integrated …

Modular extracellular sensor architecture for engineering mammalian cell-based devices

NM Daringer, RM Dudek, KA Schwarz… - ACS synthetic …, 2014 - ACS Publications
Engineering mammalian cell-based devices that monitor and therapeutically modulate
human physiology is a promising and emerging frontier in clinical synthetic biology …

Design of protein switches based on an ensemble model of allostery

JH Choi, AH Laurent, VJ Hilser, M Ostermeier - Nature communications, 2015 - nature.com
Switchable proteins that can be regulated through exogenous or endogenous inputs have a
broad range of biotechnological and biomedical applications. Here we describe the design …

Ubiquibodies, synthetic E3 ubiquitin ligases endowed with unnatural substrate specificity for targeted protein silencing

AD Portnoff, EA Stephens, JD Varner… - Journal of Biological …, 2014 - ASBMB
The ubiquitin-proteasome pathway (UPP) is the main route of protein degradation in
eukaryotic cells and is a common mechanism through which numerous cellular pathways …

Targeted insertional mutagenesis libraries for deep domain insertion profiling

W Coyote-Maestas, D Nedrud, S Okorafor… - Nucleic acids …, 2020 - academic.oup.com
Abstract Domain recombination is a key principle in protein evolution and protein
engineering, but inserting a donor domain into every position of a target protein is not easily …

Efficient modeling and simulation of bacteria-based nanonetworks with BNSim

G Wei, P Bogdan, R Marculescu - IEEE Journal on Selected …, 2013 - ieeexplore.ieee.org
Bacteria-based networks are formed using native or engineered bacteria that communicate
at nano-scale. This definition includes the micro-scale molecular transportation system …

Protein engineering: a new frontier for biological therapeutics

P H. Tobin, D H. Richards, R A. Callender… - Current drug …, 2014 - benthamdirect.com
Protein engineering holds the potential to transform the metabolic drug landscape through
the development of smart, stimulusresponsive drug systems. Protein therapeutics are a …

Design of allosterically regulated protein catalysts

OV Makhlynets, EA Raymond, IV Korendovych - Biochemistry, 2015 - ACS Publications
Activity of allosteric protein catalysts is regulated by an external stimulus, such as protein or
small molecule binding, light activation, pH change, etc., at a location away from the active …