Proteinaceous effector discovery and characterization in filamentous plant pathogens
C Kanja, KE Hammond‐Kosack - Molecular Plant Pathology, 2020 - Wiley Online Library
The complicated interplay of plant–pathogen interactions occurs on multiple levels as
pathogens evolve to constantly evade the immune responses of their hosts. Many …
pathogens evolve to constantly evade the immune responses of their hosts. Many …
Recent advances in oomycete genomics
J McGowan, DA Fitzpatrick - Advances in genetics, 2020 - Elsevier
The oomycetes are a class of ubiquitous, filamentous microorganisms that include some of
the biggest threats to global food security and natural ecosystems. Within the oomycete …
the biggest threats to global food security and natural ecosystems. Within the oomycete …
Estimating the quality of eukaryotic genomes recovered from metagenomic analysis with EukCC
Microbial eukaryotes constitute a significant fraction of biodiversity and have recently gained
more attention, but the recovery of high-quality metagenomic assembled eukaryotic …
more attention, but the recovery of high-quality metagenomic assembled eukaryotic …
UFCG: database of universal fungal core genes and pipeline for genome-wide phylogenetic analysis of fungi
In phylogenomics the evolutionary relationship of organisms is studied by their genomic
information. A common approach to phylogenomics is to extract related genes from each …
information. A common approach to phylogenomics is to extract related genes from each …
[PDF][PDF] Predicted input of uncultured fungal symbionts to a lichen symbiosis from metagenome-assembled genomes
Basidiomycete yeasts have recently been reported as stably associated secondary fungal
symbionts of many lichens, but their role in the symbiosis remains unknown. Attempts to …
symbionts of many lichens, but their role in the symbiosis remains unknown. Attempts to …
Genomic insights into the host specific adaptation of the Pneumocystis genus
Pneumocystis jirovecii, the fungal agent of human Pneumocystis pneumonia, is closely
related to macaque Pneumocystis. Little is known about other Pneumocystis species in …
related to macaque Pneumocystis. Little is known about other Pneumocystis species in …
VEBA: a modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes
JL Espinoza, CL Dupont - BMC bioinformatics, 2022 - Springer
Background With the advent of metagenomics, the importance of microorganisms and how
their interactions are relevant to ecosystem resilience, sustainability, and human health has …
their interactions are relevant to ecosystem resilience, sustainability, and human health has …
What Is in Umbilicaria pustulata? A Metagenomic Approach to Reconstruct the Holo-Genome of a Lichen
B Greshake Tzovaras, FHID Segers… - Genome Biology and …, 2020 - academic.oup.com
Lichens are valuable models in symbiosis research and promising sources of biosynthetic
genes for biotechnological applications. Most lichenized fungi grow slowly, resist …
genes for biotechnological applications. Most lichenized fungi grow slowly, resist …
Metabolic engineering of filamentous fungi
V Meyer - Metabolic engineering: concepts and applications, 2021 - Wiley Online Library
Filamentous fungi have been harnessed for the production of organic acids, antibiotics,
drugs, and enzymes for the last 100 years. Fungal biotechnology is currently undergoing a …
drugs, and enzymes for the last 100 years. Fungal biotechnology is currently undergoing a …
Comparative genomics and phylogenomic investigation of the class Geoglossomycetes provide insights into ecological specialization and the systematics of …
Despite their global presence and ubiquity, members of the class Geoglossomycetes
(Pezizomycotina, Ascomycota) are understudied systematically and ecologically. These …
(Pezizomycotina, Ascomycota) are understudied systematically and ecologically. These …