Fluorescent nucleobases as tools for studying DNA and RNA

W Xu, KM Chan, ET Kool - Nature chemistry, 2017 - nature.com
Understanding the diversity of dynamic structures and functions of DNA and RNA in biology
requires tools that can selectively and intimately probe these biomolecules. Synthetic …

[HTML][HTML] Covalent labeling of nucleic acids

N Klöcker, FP Weissenboeck… - Chemical Society Reviews, 2020 - pubs.rsc.org
Labeling of nucleic acids is required for many studies aiming to elucidate their functions and
dynamics in vitro and in cells. Out of the numerous labeling concepts that have been …

Fluorescent analogs of biomolecular building blocks: design, properties, and applications

RW Sinkeldam, NJ Greco, Y Tor - Chemical reviews, 2010 - ACS Publications
Fluorescence spectroscopy, one of the most informative and sensitive analytical techniques,
has played and continues to play key roles in modern research. Indeed, unraveling the inner …

Fundamental photophysics of isomorphic and expanded fluorescent nucleoside analogues

D Dziuba, P Didier, S Ciaco, A Barth… - Chemical Society …, 2021 - pubs.rsc.org
Fluorescent nucleoside analogues (FNAs) are structurally diverse mimics of the natural
essentially non-fluorescent nucleosides which have found numerous applications in probing …

Targeting RNA with small molecules

JR Thomas, PJ Hergenrother - Chemical reviews, 2008 - ACS Publications
The recently discovered functions of RNA dramatically expand the cellular roles for this
macromolecule. RNA can no longer be viewed as a passive element, working simply as an …

Emissive RNA alphabet

D Shin, RW Sinkeldam, Y Tor - Journal of the American Chemical …, 2011 - ACS Publications
A fluorescent ribonucleoside alphabet consisting of highly emissive purine (th A, th G) and
pyrimidine (th U, th C) analogues, all derived from thieno [3, 4-d] pyrimidine as the …

[PDF][PDF] Targeting RNA with small molecules

Y Tor - ChemBioChem, 2003 - academia.edu
Remarkable findings have cemented the central dogma of biology, where the transfer of
genetic information from a sequence of nucleotides in DNA to a string of amino acids in …

Native top-down mass spectrometry uncovers two distinct binding motifs of a functional neomycin-sensing riboswitch aptamer

SV Heel, K Bartosik, F Juen, C Kreutz… - Journal of the …, 2023 - ACS Publications
Understanding how ligands bind to ribonucleic acids (RNA) is important for understanding
RNA recognition in biological processes and drug development. Here, we have studied …

Fluorescent pyrimidine ribonucleotide: synthesis, enzymatic incorporation, and utilization

SG Srivatsan, Y Tor - Journal of the American Chemical Society, 2007 - ACS Publications
Fluorescent nucleobase analogues that respond to changes in their microenvironment are
valuable for studying RNA structure, dynamics, and recognition. The most commonly used …

Isomorphic Fluorescent Nucleosides

Y Tor - Accounts of Chemical Research, 2024 - ACS Publications
Conspectus In 1960, Weber prophesied that “There are many ways in which the properties
of the excited state can be utilized to study points of ignorance of the structure and function …