Recurrent topics in mass spectrometry-based metabolomics and lipidomics—standardization, coverage, and throughput

E Rampler, YE Abiead, H Schoeny, M Rusz… - Analytical …, 2020 - ACS Publications
We have come a long way in the last years of developing analytical strategies in
metabolomics. We have seen huge progress in tackling multiplatform measurement, data …

Metabolite measurement: pitfalls to avoid and practices to follow

W Lu, X Su, MS Klein, IA Lewis, O Fiehn… - Annual review of …, 2017 - annualreviews.org
Metabolites are the small biological molecules involved in energy conversion and
biosynthesis. Studying metabolism is inherently challenging due to metabolites' reactivity …

Suppression of antitumor T cell immunity by the oncometabolite (R)-2-hydroxyglutarate

L Bunse, S Pusch, T Bunse, F Sahm, K Sanghvi… - Nature medicine, 2018 - nature.com
Abstract The oncometabolite (R)-2-hydroxyglutarate (R-2-HG) produced by isocitrate
dehydrogenase (IDH) mutations promotes gliomagenesis via DNA and histone methylation …

Cardioprotection and lifespan extension by the natural polyamine spermidine

T Eisenberg, M Abdellatif, S Schroeder, U Primessnig… - Nature medicine, 2016 - nature.com
Aging is associated with an increased risk of cardiovascular disease and death. Here we
show that oral supplementation of the natural polyamine spermidine extends the lifespan of …

A universal trade-off between growth and lag in fluctuating environments

M Basan, T Honda, D Christodoulou, M Hörl, YF Chang… - Nature, 2020 - nature.com
The rate of cell growth is crucial for bacterial fitness and drives the allocation of bacterial
resources, affecting, for example, the expression levels of proteins dedicated to metabolism …

Disentangling metabolic functions of bacteria in the honey bee gut

L Kešnerová, RAT Mars, KM Ellegaard, M Troilo… - PLoS …, 2017 - journals.plos.org
It is presently unclear how much individual community members contribute to the overall
metabolic output of a gut microbiota. To address this question, we used the honey bee …

Metabolomics: the apogee of the omics trilogy

GJ Patti, O Yanes, G Siuzdak - Nature reviews Molecular cell biology, 2012 - nature.com
Metabolites, the chemical entities that are transformed during metabolism, provide a
functional readout of cellular biochemistry. With emerging technologies in mass …

Metabolic control of TH17 and induced Treg cell balance by an epigenetic mechanism

T Xu, KM Stewart, X Wang, K Liu, M Xie, JK Ryu, K Li… - Nature, 2017 - nature.com
Metabolism has been shown to integrate with epigenetics and transcription to modulate cell
fate and function,,. Beyond meeting the bioenergetic and biosynthetic demands of T-cell …

Data analysis strategies for targeted and untargeted LC-MS metabolomic studies: Overview and workflow

E Gorrochategui, J Jaumot, S Lacorte… - TrAC Trends in Analytical …, 2016 - Elsevier
Data analysis is a very challenging task in LC-MS metabolomic studies. The use of powerful
analytical techniques (eg, high-resolution mass spectrometry) provides high-dimensional …

Functional genomics reveal that the serine synthesis pathway is essential in breast cancer

R Possemato, KM Marks, YD Shaul, ME Pacold, D Kim… - Nature, 2011 - nature.com
Cancer cells adapt their metabolic processes to drive macromolecular biosynthesis for rapid
cell growth and proliferation,. RNA interference (RNAi)-based loss-of-function screening has …