Mechanisms of enhancer action: the known and the unknown
A Panigrahi, BW O'Malley - Genome biology, 2021 - Springer
Differential gene expression mechanisms ensure cellular differentiation and plasticity to
shape ontogenetic and phylogenetic diversity of cell types. A key regulator of differential …
shape ontogenetic and phylogenetic diversity of cell types. A key regulator of differential …
Long-range enhancer–promoter contacts in gene expression control
S Schoenfelder, P Fraser - Nature Reviews Genetics, 2019 - nature.com
Spatiotemporal gene expression programmes are orchestrated by transcriptional
enhancers, which are key regulatory DNA elements that engage in physical contacts with …
enhancers, which are key regulatory DNA elements that engage in physical contacts with …
3D enhancer-promoter interactions and multi-connected hubs: Organizational principles and functional roles
CM Uyehara, E Apostolou - Cell reports, 2023 - cell.com
The spatiotemporal control of gene expression is dependent on the activity of cis-acting
regulatory sequences, called enhancers, which regulate target genes over variable genomic …
regulatory sequences, called enhancers, which regulate target genes over variable genomic …
Developmental enhancers and chromosome topology
EEM Furlong, M Levine - Science, 2018 - science.org
Developmental enhancers mediate on/off patterns of gene expression in specific cell types
at particular stages during metazoan embryogenesis. They typically integrate multiple …
at particular stages during metazoan embryogenesis. They typically integrate multiple …
LHX2-and LDB1-mediated trans interactions regulate olfactory receptor choice
The genome is partitioned into topologically associated domains and genomic
compartments with shared chromatin valence. This architecture is constrained by the DNA …
compartments with shared chromatin valence. This architecture is constrained by the DNA …
YY1-controlled regulatory connectivity and transcription are influenced by the cell cycle
Few transcription factors have been examined for their direct roles in physically connecting
enhancers and promoters. Here acute degradation of Yin Yang 1 (YY1) in erythroid cells …
enhancers and promoters. Here acute degradation of Yin Yang 1 (YY1) in erythroid cells …
[HTML][HTML] Cohesin-dependent and-independent mechanisms mediate chromosomal contacts between promoters and enhancers
MJ Thiecke, G Wutz, M Muhar, W Tang, S Bevan… - Cell reports, 2020 - cell.com
It is currently assumed that 3D chromosomal organization plays a central role in
transcriptional control. However, depletion of cohesin and CTCF affects the steady-state …
transcriptional control. However, depletion of cohesin and CTCF affects the steady-state …
BE-PLUS: a new base editing tool with broadened editing window and enhanced fidelity
Base editor (BE), containing a cytidine deaminase and catalytically defective Cas9, has
been widely used to perform base editing. However, the narrow editing window of BE limits …
been widely used to perform base editing. However, the narrow editing window of BE limits …
Lineage-specific 3D genome organization is assembled at multiple scales by IKAROS
Y Hu, DS Figueroa, Z Zhang, M Veselits… - Cell, 2023 - cell.com
A generic level of chromatin organization generated by the interplay between cohesin and
CTCF suffices to limit promiscuous interactions between regulatory elements, but a lineage …
CTCF suffices to limit promiscuous interactions between regulatory elements, but a lineage …
Predicting enhancer‐promoter interaction from genomic sequence with deep neural networks
Background In the human genome, distal enhancers are involved in regulating target genes
through proximal promoters by forming enhancer‐promoter interactions. Although recently …
through proximal promoters by forming enhancer‐promoter interactions. Although recently …