Overview of methods for characterization and visualization of a protein–protein interaction network in a multi-omics integration context

V Robin, A Bodein, MP Scott-Boyer… - Frontiers in Molecular …, 2022 - frontiersin.org
At the heart of the cellular machinery through the regulation of cellular functions, protein–
protein interactions (PPIs) have a significant role. PPIs can be analyzed with network …

[HTML][HTML] Boosting-based ensemble of global network aligners for PPI network alignment

M Menor-Flores, MA Vega-Rodríguez - Expert Systems with Applications, 2023 - Elsevier
The number of investigations attempting to align protein–protein interaction (PPI) networks
has increased with the growth of studies focused on collecting PPI data. These works aim to …

BioAlign: an accurate global PPI network alignment algorithm

U Ayub, H Naveed - Evolutionary Bioinformatics, 2022 - journals.sagepub.com
Motivation: The advancement of high-throughput PPI profiling techniques results in
generating a large amount of PPI data. The alignment of the PPI networks uncovers the …

CINA: Curvature-Based Integrated Network Alignment with Hypergraph

P Jiao, Y Liu, Y Wang, G Zhang - 2024 IEEE 40th International …, 2024 - ieeexplore.ieee.org
Network alignment involves identifying corresponding nodes across multiple networks. The
majority of existing methods adhere to the assumption of consistency. However, due to …

SAMNA: accurate alignment of multiple biological networks based on simulated annealing

J Chen, Z Wang, J Huang - Journal of Integrative Bioinformatics, 2024 - degruyter.com
Proteins are important parts of the biological structures and encode a lot of biological
information. Protein–protein interaction network alignment is a model for analyzing proteins …

[HTML][HTML] 用于成对PPI 网络比对的分治与整合算法

刘晓, 陈璟, 王子祥 - 智能系统学报, 2022 - html.rhhz.net
生物网络比对是分析不同生物间进化关系的重要手段, 它可以揭示不同物种间的保守功能并为
物种间的注释转移提供重要信息. 网络比对与子图同构类似, 是一个NP-hard 问题 …

Network-Based RNA Structural Alignment Through Optimal Local Neighborhood Matching

HM Woo, BJ Yoon - 2020 54th Asilomar Conference on Signals …, 2020 - ieeexplore.ieee.org
Structural alignment of RNAs provides an effective way to compare and study RNAs,
especially for those that have low sequence similarity yet retain high similarity in terms of …