Overview of methods for characterization and visualization of a protein–protein interaction network in a multi-omics integration context
V Robin, A Bodein, MP Scott-Boyer… - Frontiers in Molecular …, 2022 - frontiersin.org
At the heart of the cellular machinery through the regulation of cellular functions, protein–
protein interactions (PPIs) have a significant role. PPIs can be analyzed with network …
protein interactions (PPIs) have a significant role. PPIs can be analyzed with network …
[HTML][HTML] Boosting-based ensemble of global network aligners for PPI network alignment
M Menor-Flores, MA Vega-Rodríguez - Expert Systems with Applications, 2023 - Elsevier
The number of investigations attempting to align protein–protein interaction (PPI) networks
has increased with the growth of studies focused on collecting PPI data. These works aim to …
has increased with the growth of studies focused on collecting PPI data. These works aim to …
BioAlign: an accurate global PPI network alignment algorithm
Motivation: The advancement of high-throughput PPI profiling techniques results in
generating a large amount of PPI data. The alignment of the PPI networks uncovers the …
generating a large amount of PPI data. The alignment of the PPI networks uncovers the …
CINA: Curvature-Based Integrated Network Alignment with Hypergraph
Network alignment involves identifying corresponding nodes across multiple networks. The
majority of existing methods adhere to the assumption of consistency. However, due to …
majority of existing methods adhere to the assumption of consistency. However, due to …
SAMNA: accurate alignment of multiple biological networks based on simulated annealing
J Chen, Z Wang, J Huang - Journal of Integrative Bioinformatics, 2024 - degruyter.com
Proteins are important parts of the biological structures and encode a lot of biological
information. Protein–protein interaction network alignment is a model for analyzing proteins …
information. Protein–protein interaction network alignment is a model for analyzing proteins …
[HTML][HTML] 用于成对PPI 网络比对的分治与整合算法
刘晓, 陈璟, 王子祥 - 智能系统学报, 2022 - html.rhhz.net
生物网络比对是分析不同生物间进化关系的重要手段, 它可以揭示不同物种间的保守功能并为
物种间的注释转移提供重要信息. 网络比对与子图同构类似, 是一个NP-hard 问题 …
物种间的注释转移提供重要信息. 网络比对与子图同构类似, 是一个NP-hard 问题 …
Network-Based RNA Structural Alignment Through Optimal Local Neighborhood Matching
Structural alignment of RNAs provides an effective way to compare and study RNAs,
especially for those that have low sequence similarity yet retain high similarity in terms of …
especially for those that have low sequence similarity yet retain high similarity in terms of …