Machine learning approaches for biomarker discovery using gene expression data

X Zhang, I Jonassen, A Goksøyr - Bioinformatics, 2021 - bora.uib.no
Biomarkers are of great importance in many fields, such as cancer research, toxicology,
diagnosis and treatment of diseases, and to better understand biological response …

Recent developments in systems biology and metabolic engineering of plant–microbe interactions

V Kumar, M Baweja, PK Singh, P Shukla - Frontiers in plant science, 2016 - frontiersin.org
Microorganisms play a crucial role in the sustainability of the various ecosystems. The
characterization of various interactions between microorganisms and other biotic factors is a …

Microbiome systems biology advancements for natural well-being

G Chatterjee, S Negi, S Basu, J Faintuch… - Science of The Total …, 2022 - Elsevier
Throughout the years all data from epidemiological, physiological and omics have
suggested that the microbial communities play a considerable role in modulating human …

[HTML][HTML] Next generation microbiological risk assessment—Potential of omics data for hazard characterisation

N Haddad, N Johnson, S Kathariou, A Métris… - International journal of …, 2018 - Elsevier
Abstract According to the World Health Organization estimates in 2015, 600 million people
fall ill every year from contaminated food and 420,000 die. Microbial risk assessment (MRA) …

Structural host-microbiota interaction networks

E Guven-Maiorov, CJ Tsai… - PLoS computational …, 2017 - journals.plos.org
Hundreds of different species colonize multicellular organisms making them
“metaorganisms”. A growing body of data supports the role of microbiota in health and in …

Progress in characterizing the linkage between Fusobacterium nucleatum and gastrointestinal cancer

Y Liu, Y Baba, T Ishimoto, M Iwatsuki, Y Hiyoshi… - Journal of …, 2019 - Springer
Microbiome research is a rapidly advancing field in human cancers. Fusobacterium
nucleatum is an oral bacterium, indigenous to the human oral cavity, that plays a role in …

Clinical metagenomics for infectious corneal ulcers: Rags to riches?

L Ung, PJM Bispo, T Doan, RN Van Gelder… - The ocular …, 2020 - Elsevier
The emergence of clinical metagenomics as an unbiased, hypothesis-free approach to
diagnostic testing is set to fundamentally alter the way infectious diseases are detected …

Integrative analyses of probiotics, pathogenic infections and host immune response highlight the importance of gut microbiota in understanding disease recovery in …

JA Rasmussen, KR Villumsen… - Journal of Applied …, 2022 - academic.oup.com
Aims Given the pivotal role played by the gut microbiota in regulating the host immune
system, great interest has arisen in the possibility of controlling fish health by modulating the …

Protein-protein interactions of human viruses

N Goodacre, P Devkota, E Bae, S Wuchty… - Seminars in cell & …, 2020 - Elsevier
Viruses infect their human hosts by a series of interactions between viral and host proteins,
indicating that detailed knowledge of such virus-host interaction interfaces are critical for our …

Consequential innovations in nature-inspired intelligent computing techniques for biomarkers and potential therapeutics identification

K Sheikh, S Sayeed, A Asif, MF Siddiqui… - … computing techniques in …, 2022 - Springer
Computational biology has changed how healthcare systems and biomedical engineering
work. Nature-inspired intelligent computing (NIIC) approaches in predicting potential …