Major new microbial groups expand diversity and alter our understanding of the tree of life

CJ Castelle, JF Banfield - Cell, 2018 - cell.com
The recent recovery of genomes for organisms from phyla with no isolated representative
(candidate phyla) via cultivation-independent genomics enabled delineation of major new …

Trends in microbial community composition and function by soil depth

D Naylor, R McClure, J Jansson - Microorganisms, 2022 - mdpi.com
Microbial communities play important roles in soil health, contributing to processes such as
the turnover of organic matter and nutrient cycling. As soil edaphic properties such as …

[HTML][HTML] Soil multifunctionality is affected by the soil environment and by microbial community composition and diversity

Q Zheng, Y Hu, S Zhang, L Noll, T Böckle… - Soil Biology and …, 2019 - Elsevier
Microorganisms are critical in mediating carbon (C) and nitrogen (N) cycling processes in
soils. Yet, it has long been debated whether the processes underlying biogeochemical …

Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses

S Roux, JR Brum, BE Dutilh, S Sunagawa… - Nature, 2016 - nature.com
Ocean microbes drive biogeochemical cycling on a global scale. However, this cycling is
constrained by viruses that affect community composition, metabolic activity, and …

Nitrous oxide production by ammonia oxidizers: physiological diversity, niche differentiation and potential mitigation strategies

JI Prosser, L Hink, C Gubry‐Rangin… - Global Change …, 2020 - Wiley Online Library
Oxidation of ammonia to nitrite by bacteria and archaea is responsible for global emissions
of nitrous oxide directly and indirectly through provision of nitrite and, after further oxidation …

Nitrification and beyond: metabolic versatility of ammonia oxidising archaea

CL Wright, LE Lehtovirta-Morley - The ISME Journal, 2023 - academic.oup.com
Ammonia oxidising archaea are among the most abundant living organisms on Earth and
key microbial players in the global nitrogen cycle. They carry out oxidation of ammonia to …

The growing tree of Archaea: new perspectives on their diversity, evolution and ecology

PS Adam, G Borrel, C Brochier-Armanet… - The ISME …, 2017 - academic.oup.com
The Archaea occupy a key position in the Tree of Life, and are a major fraction of microbial
diversity. Abundant in soils, ocean sediments and the water column, they have crucial roles …

Extreme summers impact cropland and grassland soil microbiomes

Q Bei, T Reitz, B Schnabel, N Eisenhauer… - The ISME …, 2023 - academic.oup.com
The increasing frequency of extreme weather events highlights the need to understand how
soil microbiomes respond to such disturbances. Here, metagenomics was used to …

METABOLIC: high-throughput profiling of microbial genomes for functional traits, metabolism, biogeochemistry, and community-scale functional networks

Z Zhou, PQ Tran, AM Breister, Y Liu, K Kieft, ES Cowley… - Microbiome, 2022 - Springer
Background Advances in microbiome science are being driven in large part due to our
ability to study and infer microbial ecology from genomes reconstructed from mixed …

[HTML][HTML] Archaea biotechnology

K Pfeifer, İ Ergal, M Koller, M Basen, B Schuster… - Biotechnology …, 2021 - Elsevier
Archaea are a domain of prokaryotic organisms with intriguing physiological characteristics
and ecological importance. In Microbial Biotechnology, archaea are historically …