Opportunities and challenges of single-cell and spatially resolved genomics methods for neuroscience discovery
Over the past decade, single-cell genomics technologies have allowed scalable profiling of
cell-type-specific features, which has substantially increased our ability to study cellular …
cell-type-specific features, which has substantially increased our ability to study cellular …
Interpreting non-coding disease-associated human variants using single-cell epigenomics
Genome-wide association studies (GWAS) have linked hundreds of thousands of sequence
variants in the human genome to common traits and diseases. However, translating this …
variants in the human genome to common traits and diseases. However, translating this …
Joint single-cell profiling resolves 5mC and 5hmC and reveals their distinct gene regulatory effects
Abstract Oxidative modification of 5-methylcytosine (5mC) by ten-eleven translocation (TET)
DNA dioxygenases generates 5-hydroxymethylcytosine (5hmC), the most abundant form of …
DNA dioxygenases generates 5-hydroxymethylcytosine (5hmC), the most abundant form of …
Simultaneous single-cell analysis of 5mC and 5hmC with SIMPLE-seq
Abstract Dynamic 5-methylcytosine (5mC) and 5-hydroxymethylcytosine (5hmC)
modifications to DNA regulate gene expression in a cell-type-specific manner and are …
modifications to DNA regulate gene expression in a cell-type-specific manner and are …
Advances in single-cell omics and multiomics for high-resolution molecular profiling
J Lim, C Park, M Kim, H Kim, J Kim… - Experimental & Molecular …, 2024 - nature.com
Single-cell omics technologies have revolutionized molecular profiling by providing high-
resolution insights into cellular heterogeneity and complexity. Traditional bulk omics …
resolution insights into cellular heterogeneity and complexity. Traditional bulk omics …
Droplet-based bisulfite sequencing for high-throughput profiling of single-cell DNA methylomes
The genome-wide DNA methylation profile, or DNA methylome, is a critical component of the
overall epigenomic landscape that modulates gene activities and cell fate. Single-cell DNA …
overall epigenomic landscape that modulates gene activities and cell fate. Single-cell DNA …
Introduction to epigenetics
Epigenetics is the study of inherited variations in gene expression that do not involve
changes to DNA sequences. Over 200 unique cell types in a human adult have a nearly …
changes to DNA sequences. Over 200 unique cell types in a human adult have a nearly …
Epigenomic characterization of lymphoid neoplasms
M Duran-Ferrer, JI Martín-Subero - Annual Review of Pathology …, 2024 - annualreviews.org
Lymphoid neoplasms represent a heterogeneous group of disease entities and subtypes
with markedly different molecular and clinical features. Beyond genetic alterations, lymphoid …
with markedly different molecular and clinical features. Beyond genetic alterations, lymphoid …
Single-cell multiomics reveals the interplay of clonal evolution and cellular plasticity in hepatoblastoma
A Roehrig, TZ Hirsch, A Pire, G Morcrette… - Nature …, 2024 - nature.com
Hepatoblastomas (HB) display heterogeneous cellular phenotypes that influence the clinical
outcome, but the underlying mechanisms are poorly understood. Here, we use a single-cell …
outcome, but the underlying mechanisms are poorly understood. Here, we use a single-cell …
sciMET-cap: High-throughput single-cell methylation analysis with a reduced sequencing burden
SN Acharya, RV Nichols, LE Rylaarsdam… - Genome biology, 2024 - Springer
DNA methylation is a key component of the mammalian epigenome, playing a regulatory
role in development, disease, and other processes. Robust, high-throughput single-cell DNA …
role in development, disease, and other processes. Robust, high-throughput single-cell DNA …