Opportunities and challenges of single-cell and spatially resolved genomics methods for neuroscience discovery

B Bonev, CB Gonçalo, F Chen, S Codeluppi… - Nature …, 2024 - nature.com
Over the past decade, single-cell genomics technologies have allowed scalable profiling of
cell-type-specific features, which has substantially increased our ability to study cellular …

Interpreting non-coding disease-associated human variants using single-cell epigenomics

KJ Gaulton, S Preissl, B Ren - Nature Reviews Genetics, 2023 - nature.com
Genome-wide association studies (GWAS) have linked hundreds of thousands of sequence
variants in the human genome to common traits and diseases. However, translating this …

Joint single-cell profiling resolves 5mC and 5hmC and reveals their distinct gene regulatory effects

EB Fabyanic, P Hu, Q Qiu, KN Berríos… - Nature …, 2024 - nature.com
Abstract Oxidative modification of 5-methylcytosine (5mC) by ten-eleven translocation (TET)
DNA dioxygenases generates 5-hydroxymethylcytosine (5hmC), the most abundant form of …

Simultaneous single-cell analysis of 5mC and 5hmC with SIMPLE-seq

D Bai, X Zhang, H Xiang, Z Guo, C Zhu, C Yi - Nature Biotechnology, 2024 - nature.com
Abstract Dynamic 5-methylcytosine (5mC) and 5-hydroxymethylcytosine (5hmC)
modifications to DNA regulate gene expression in a cell-type-specific manner and are …

Advances in single-cell omics and multiomics for high-resolution molecular profiling

J Lim, C Park, M Kim, H Kim, J Kim… - Experimental & Molecular …, 2024 - nature.com
Single-cell omics technologies have revolutionized molecular profiling by providing high-
resolution insights into cellular heterogeneity and complexity. Traditional bulk omics …

Droplet-based bisulfite sequencing for high-throughput profiling of single-cell DNA methylomes

Q Zhang, S Ma, Z Liu, B Zhu, Z Zhou, G Li… - Nature …, 2023 - nature.com
The genome-wide DNA methylation profile, or DNA methylome, is a critical component of the
overall epigenomic landscape that modulates gene activities and cell fate. Single-cell DNA …

Introduction to epigenetics

N Singla, R Thapa, R Kulshrestha, AA Bhat… - Targeting epigenetics in …, 2023 - Springer
Epigenetics is the study of inherited variations in gene expression that do not involve
changes to DNA sequences. Over 200 unique cell types in a human adult have a nearly …

Epigenomic characterization of lymphoid neoplasms

M Duran-Ferrer, JI Martín-Subero - Annual Review of Pathology …, 2024 - annualreviews.org
Lymphoid neoplasms represent a heterogeneous group of disease entities and subtypes
with markedly different molecular and clinical features. Beyond genetic alterations, lymphoid …

Single-cell multiomics reveals the interplay of clonal evolution and cellular plasticity in hepatoblastoma

A Roehrig, TZ Hirsch, A Pire, G Morcrette… - Nature …, 2024 - nature.com
Hepatoblastomas (HB) display heterogeneous cellular phenotypes that influence the clinical
outcome, but the underlying mechanisms are poorly understood. Here, we use a single-cell …

sciMET-cap: High-throughput single-cell methylation analysis with a reduced sequencing burden

SN Acharya, RV Nichols, LE Rylaarsdam… - Genome biology, 2024 - Springer
DNA methylation is a key component of the mammalian epigenome, playing a regulatory
role in development, disease, and other processes. Robust, high-throughput single-cell DNA …