Transient protein–protein interactions

SE Acuner Ozbabacan, HB Engin… - … , Design & Selection, 2011 - academic.oup.com
Transient complexes are crucial for diverse biological processes such as biochemical
pathways and signaling cascades in the cell. Here, we give an overview of the transient …

Protein–protein interaction and quaternary structure

J Janin, RP Bahadur, P Chakrabarti - Quarterly reviews of biophysics, 2008 - cambridge.org
Protein–protein recognition plays an essential role in structure and function. Specific non-
covalent interactions stabilize the structure of macromolecular assemblies, exemplified in …

[HTML][HTML] Truncated FGFR2 is a clinically actionable oncogene in multiple cancers

D Zingg, J Bhin, J Yemelyanenko, SM Kas, F Rolfs… - Nature, 2022 - nature.com
Somatic hotspot mutations and structural amplifications and fusions that affect fibroblast
growth factor receptor 2 (encoded by FGFR2) occur in multiple types of cancer. However …

A compact vocabulary of paratope-epitope interactions enables predictability of antibody-antigen binding

R Akbar, PA Robert, M Pavlović, JR Jeliazkov… - Cell Reports, 2021 - cell.com
Antibody-antigen binding relies on the specific interaction of amino acids at the paratope-
epitope interface. The predictability of antibody-antigen binding is a prerequisite for de novo …

3did: a catalog of domain-based interactions of known three-dimensional structure

R Mosca, A Céol, A Stein, R Olivella… - Nucleic acids …, 2014 - academic.oup.com
The database of 3D interacting domains (3did, available online for browsing and bulk
download at http://3did. irbbarcelona. org) is a catalog of protein–protein interactions for …

DCEO biotechnology: tools to design, construct, evaluate, and optimize the metabolic pathway for biosynthesis of chemicals

X Chen, C Gao, L Guo, G Hu, Q Luo, J Liu… - Chemical …, 2018 - ACS Publications
Chemical synthesis is a well established route for producing many chemicals on a large
scale, but some drawbacks still exist in this process, such as unstable intermediates …

The folding and evolution of multidomain proteins

JH Han, S Batey, AA Nickson, SA Teichmann… - … reviews Molecular cell …, 2007 - nature.com
Analyses of genomes show that more than 70% of eukaryotic proteins are composed of
multiple domains. However, most studies of protein folding focus on individual domains and …

Deciphering protein–protein interactions. Part I. Experimental techniques and databases

BA Shoemaker, AR Panchenko - PLoS computational biology, 2007 - journals.plos.org
Proteins interact with each other in a highly specific manner, and protein interactions play a
key role in many cellular processes; in particular, the distortion of protein interfaces may lead …

3D complex: a structural classification of protein complexes

ED Levy, JB Pereira-Leal, C Chothia… - PLoS computational …, 2006 - journals.plos.org
Most of the proteins in a cell assemble into complexes to carry out their function. It is
therefore crucial to understand the physicochemical properties as well as the evolution of …

Recent progress and future directions in protein-protein docking

DW Ritchie - Current protein and peptide science, 2008 - ingentaconnect.com
This article gives an overview of recent progress in protein-protein docking and it identifies
several directions for future research. Recent results from the CAPRI blind docking …