Applications of machine learning in drug discovery and development

J Vamathevan, D Clark, P Czodrowski… - Nature reviews Drug …, 2019 - nature.com
Drug discovery and development pipelines are long, complex and depend on numerous
factors. Machine learning (ML) approaches provide a set of tools that can improve discovery …

Deep learning for cellular image analysis

E Moen, D Bannon, T Kudo, W Graf, M Covert… - Nature …, 2019 - nature.com
Recent advances in computer vision and machine learning underpin a collection of
algorithms with an impressive ability to decipher the content of images. These deep learning …

Molecular contrastive learning of representations via graph neural networks

Y Wang, J Wang, Z Cao… - Nature Machine …, 2022 - nature.com
Molecular machine learning bears promise for efficient molecular property prediction and
drug discovery. However, labelled molecule data can be expensive and time consuming to …

Pre-training molecular graph representation with 3d geometry

S Liu, H Wang, W Liu, J Lasenby, H Guo… - arXiv preprint arXiv …, 2021 - arxiv.org
Molecular graph representation learning is a fundamental problem in modern drug and
material discovery. Molecular graphs are typically modeled by their 2D topological …

Self-supervised graph transformer on large-scale molecular data

Y Rong, Y Bian, T Xu, W Xie, Y Wei… - Advances in neural …, 2020 - proceedings.neurips.cc
How to obtain informative representations of molecules is a crucial prerequisite in AI-driven
drug design and discovery. Recent researches abstract molecules as graphs and employ …

Deep graph library: A graph-centric, highly-performant package for graph neural networks

M Wang, D Zheng, Z Ye, Q Gan, M Li, X Song… - arXiv preprint arXiv …, 2019 - arxiv.org
Advancing research in the emerging field of deep graph learning requires new tools to
support tensor computation over graphs. In this paper, we present the design principles and …

Concepts of artificial intelligence for computer-assisted drug discovery

X Yang, Y Wang, R Byrne, G Schneider… - Chemical …, 2019 - ACS Publications
Artificial intelligence (AI), and, in particular, deep learning as a subcategory of AI, provides
opportunities for the discovery and development of innovative drugs. Various machine …

Artificial intelligence in drug discovery: recent advances and future perspectives

J Jiménez-Luna, F Grisoni, N Weskamp… - Expert opinion on drug …, 2021 - Taylor & Francis
Introduction: Artificial intelligence (AI) has inspired computer-aided drug discovery. The
widespread adoption of machine learning, in particular deep learning, in multiple scientific …

Deep learning in chemistry

AC Mater, ML Coote - Journal of chemical information and …, 2019 - ACS Publications
Machine learning enables computers to address problems by learning from data. Deep
learning is a type of machine learning that uses a hierarchical recombination of features to …

Massively multilingual neural machine translation in the wild: Findings and challenges

N Arivazhagan, A Bapna, O Firat, D Lepikhin… - arXiv preprint arXiv …, 2019 - arxiv.org
We introduce our efforts towards building a universal neural machine translation (NMT)
system capable of translating between any language pair. We set a milestone towards this …