Ancient DNA analysis

L Orlando, R Allaby, P Skoglund… - Nature reviews …, 2021 - nature.com
Although the first ancient DNA molecules were extracted more than three decades ago, the
first ancient nuclear genomes could only be characterized after high-throughput sequencing …

Ten years of next-generation sequencing technology

EL Van Dijk, H Auger, Y Jaszczyszyn, C Thermes - Trends in genetics, 2014 - cell.com
Ten years ago next-generation sequencing (NGS) technologies appeared on the market.
During the past decade, tremendous progress has been made in terms of speed, read …

[图书][B] Who we are and how we got here: Ancient DNA and the new science of the human past

D Reich - 2018 - books.google.com
The past few years have witnessed a revolution in our ability to obtain DNA from ancient
humans. This important new data has added to our knowledge from archaeology and …

[HTML][HTML] Schmutzi: estimation of contamination and endogenous mitochondrial consensus calling for ancient DNA

G Renaud, V Slon, AT Duggan, J Kelso - Genome biology, 2015 - Springer
Ancient DNA is typically highly degraded with appreciable cytosine deamination, and
contamination with present-day DNA often complicates the identification of endogenous …

A draft sequence of the Neandertal genome

RE Green, J Krause, AW Briggs, T Maricic, U Stenzel… - science, 2010 - science.org
Neandertals, the closest evolutionary relatives of present-day humans, lived in large parts of
Europe and western Asia before disappearing 30,000 years ago. We present a draft …

The genome of the domesticated apple (Malus × domestica Borkh.)

R Velasco, A Zharkikh, J Affourtit, A Dhingra… - Nature …, 2010 - nature.com
We report a high-quality draft genome sequence of the domesticated apple (Malus×
domestica). We show that a relatively recent (> 50 million years ago) genome-wide …

Testing for ancient admixture between closely related populations

EY Durand, N Patterson, D Reich… - Molecular biology and …, 2011 - academic.oup.com
One enduring question in evolutionary biology is the extent of archaic admixture in the
genomes of present-day populations. In this paper, we present a test for ancient admixture …

[HTML][HTML] An integrated semiconductor device enabling non-optical genome sequencing

JM Rothberg, W Hinz, TM Rearick, J Schultz, W Mileski… - Nature, 2011 - nature.com
The seminal importance of DNA sequencing to the life sciences, biotechnology and
medicine has driven the search for more scalable and lower-cost solutions. Here we …

Complete mitochondrial genomes of ancient canids suggest a European origin of domestic dogs

O Thalmann, B Shapiro, P Cui, VJ Schuenemann… - Science, 2013 - science.org
The geographic and temporal origins of the domestic dog remain controversial, as genetic
data suggest a domestication process in East Asia beginning 15,000 years ago, whereas …

Sequencing technologies—the next generation

ML Metzker - Nature reviews genetics, 2010 - nature.com
Demand has never been greater for revolutionary technologies that deliver fast, inexpensive
and accurate genome information. This challenge has catalysed the development of next …