Mechanisms of lncRNA biogenesis as revealed by nascent transcriptomics
T Nojima, NJ Proudfoot - Nature reviews Molecular cell biology, 2022 - nature.com
Mammalian genomes express two principal gene categories through RNA polymerase II-
mediated transcription: protein-coding transcription units and non-coding RNA transcription …
mediated transcription: protein-coding transcription units and non-coding RNA transcription …
RNA polymerase II speed: a key player in controlling and adapting transcriptome composition
L Muniz, E Nicolas, D Trouche - The EMBO journal, 2021 - embopress.org
Abstract RNA polymerase II (RNA Pol II) speed or elongation rate, ie, the number of
nucleotides synthesized per unit of time, is a major determinant of transcriptome …
nucleotides synthesized per unit of time, is a major determinant of transcriptome …
The code and beyond: transcription regulation by the RNA polymerase II carboxy-terminal domain
KM Harlen, LS Churchman - Nature reviews Molecular cell biology, 2017 - nature.com
The carboxy-terminal domain (CTD) extends from the largest subunit of RNA polymerase II
(Pol II) as a long, repetitive and largely unstructured polypeptide chain. Throughout the …
(Pol II) as a long, repetitive and largely unstructured polypeptide chain. Throughout the …
Splicing and transcription touch base: co-transcriptional spliceosome assembly and function
Several macromolecular machines collaborate to produce eukaryotic messenger RNA. RNA
polymerase II (Pol II) translocates along genes that are up to millions of base pairs in length …
polymerase II (Pol II) translocates along genes that are up to millions of base pairs in length …
Nascent RNA analyses: tracking transcription and its regulation
The programmes that direct an organism's development and maintenance are encoded in its
genome. Decoding of this information begins with regulated transcription of genomic DNA …
genome. Decoding of this information begins with regulated transcription of genomic DNA …
Lysine/RNA-interactions drive and regulate biomolecular condensation
T Ukmar-Godec, S Hutten, MP Grieshop… - Nature …, 2019 - nature.com
Cells form and use biomolecular condensates to execute biochemical reactions. The
molecular properties of non-membrane-bound condensates are directly connected to the …
molecular properties of non-membrane-bound condensates are directly connected to the …
Transcription shapes genome-wide histone acetylation patterns
BJE Martin, J Brind'Amour, A Kuzmin… - Nature …, 2021 - nature.com
Histone acetylation is a ubiquitous hallmark of transcription, but whether the link between
histone acetylation and transcription is causal or consequential has not been addressed …
histone acetylation and transcription is causal or consequential has not been addressed …
CDK12 loss in cancer cells affects DNA damage response genes through premature cleavage and polyadenylation
M Krajewska, R Dries, AV Grassetti, S Dust… - Nature …, 2019 - nature.com
Abstract Cyclin-dependent kinase 12 (CDK12) modulates transcription elongation by
phosphorylating the carboxy-terminal domain of RNA polymerase II and selectively affects …
phosphorylating the carboxy-terminal domain of RNA polymerase II and selectively affects …
Structure of a transcribing RNA polymerase II–U1 snRNP complex
S Zhang, S Aibara, SM Vos, DE Agafonov, R Lührmann… - Science, 2021 - science.org
To initiate cotranscriptional splicing, RNA polymerase II (Pol II) recruits the U1 small nuclear
ribonucleoprotein particle (U1 snRNP) to nascent precursor messenger RNA (pre-mRNA) …
ribonucleoprotein particle (U1 snRNP) to nascent precursor messenger RNA (pre-mRNA) …
The pol II CTD: new twists in the tail
J Zaborowska, S Egloff, S Murphy - Nature structural & molecular …, 2016 - nature.com
The C-terminal domain (CTD) of the large subunit of RNA polymerase (pol) II comprises
conserved heptad repeats, and post-translational modification of the CTD regulates …
conserved heptad repeats, and post-translational modification of the CTD regulates …