Genome evolution in plants and the origins of innovation
JW Clark - New Phytologist, 2023 - Wiley Online Library
Plant evolution has been characterised by a series of major novelties in their vegetative and
reproductive traits that have led to greater complexity. Underpinning this diversification has …
reproductive traits that have led to greater complexity. Underpinning this diversification has …
Reconstructing the last common ancestor of all eukaryotes
Understanding the origin of eukaryotic cells is one of the most difficult problems in all of
biology. A key challenge relevant to the question of eukaryogenesis is reconstructing the …
biology. A key challenge relevant to the question of eukaryogenesis is reconstructing the …
A transcriptomic hourglass in brown algae
JS Lotharukpong, M Zheng, R Luthringer, D Liesner… - Nature, 2024 - nature.com
Complex multicellularity has emerged independently across a few eukaryotic lineages and
is often associated with the rise of elaborate, tightly coordinated developmental processes …
is often associated with the rise of elaborate, tightly coordinated developmental processes …
Where the minor things are: a pan-eukaryotic survey suggests neutral processes may explain much of minor intron evolution
Spliceosomal introns are gene segments removed from RNA transcripts by
ribonucleoprotein machineries called spliceosomes. In some eukaryotes a second …
ribonucleoprotein machineries called spliceosomes. In some eukaryotes a second …
pLM-BLAST: distant homology detection based on direct comparison of sequence representations from protein language models
K Kaminski, J Ludwiczak, K Pawlicki, V Alva… - …, 2023 - academic.oup.com
Motivation The detection of homology through sequence comparison is a typical first step in
the study of protein function and evolution. In this work, we explore the applicability of …
the study of protein function and evolution. In this work, we explore the applicability of …
Single-cell atlases of two lophotrochozoan larvae highlight their complex evolutionary histories
L Piovani, DJ Leite, LA Yañez Guerra, F Simpson… - Science …, 2023 - science.org
Pelagic larval stages are widespread across animals, yet it is unclear whether larvae were
present in the last common ancestor of animals or whether they evolved multiple times due …
present in the last common ancestor of animals or whether they evolved multiple times due …
A highly contiguous genome assembly reveals sources of genomic novelty in the symbiotic fungus Rhizophagus irregularis
BF Manley, JS Lotharukpong… - G3: Genes …, 2023 - academic.oup.com
The root systems of most plant species are aided by the soil-foraging capacities of symbiotic
arbuscular mycorrhizal (AM) fungi of the Glomeromycotina subphylum. Despite recent …
arbuscular mycorrhizal (AM) fungi of the Glomeromycotina subphylum. Despite recent …
De Novo Emerged Gene Search in Eukaryotes with DENSE
P Roginski, A Grandchamp, C Quignot… - Genome Biology and …, 2024 - academic.oup.com
The discovery of de novo emerged genes, originating from previously noncoding DNA
regions, challenges traditional views of species evolution. Indeed, the hypothesis of …
regions, challenges traditional views of species evolution. Indeed, the hypothesis of …
The brittle star genome illuminates the genetic basis of animal appendage regeneration
Species within nearly all extant animal lineages are capable of regenerating body parts.
However, it remains unclear whether the gene expression programme controlling …
However, it remains unclear whether the gene expression programme controlling …
Evolutionary assembly of the plant terrestrialization toolkit from protein domains
A Dhabalia Ashok, S de Vries, T Darienko… - …, 2024 - royalsocietypublishing.org
Land plants (embryophytes) came about in a momentous evolutionary singularity: plant
terrestrialization. This event marks not only the conquest of land by plants but also the …
terrestrialization. This event marks not only the conquest of land by plants but also the …