ERK signalling: a master regulator of cell behaviour, life and fate

H Lavoie, J Gagnon, M Therrien - Nature reviews Molecular cell biology, 2020 - nature.com
The proteins extracellular signal-regulated kinase 1 (ERK1) and ERK2 are the downstream
components of a phosphorelay pathway that conveys growth and mitogenic signals largely …

In-cell structural biology by NMR: the benefits of the atomic scale

FX Theillet - Chemical reviews, 2022 - ACS Publications
In-cell structural biology aims at extracting structural information about proteins or nucleic
acids in their native, cellular environment. This emerging field holds great promise and is …

Transcription regulation by the Mediator complex

J Soutourina - Nature reviews Molecular cell biology, 2018 - nature.com
Alterations in the regulation of gene expression are frequently associated with
developmental diseases or cancer. Transcription activation is a key phenomenon in the …

Deciphering protein post-translational modifications using chemical biology tools

AC Conibear - Nature Reviews Chemistry, 2020 - nature.com
Proteins carry out a wide variety of catalytic, regulatory, signalling and structural functions in
living systems. Following their assembly on ribosomes and throughout their lifetimes, most …

[PDF][PDF] Condensed-phase signaling can expand kinase specificity and respond to macromolecular crowding

D Sang, T Shu, CF Pantoja, AI de Opakua… - Molecular cell, 2022 - cell.com
Phase separation can concentrate biomolecules and accelerate reactions. However, the
mechanisms and principles connecting this mesoscale organization to signaling dynamics …

[HTML][HTML] Structure and mechanism of the RNA polymerase II transcription machinery

AC Schier, DJ Taatjes - Genes & development, 2020 - genesdev.cshlp.org
Abstract RNA polymerase II (Pol II) transcribes all protein-coding genes and many
noncoding RNAs in eukaryotic genomes. Although Pol II is a complex, 12-subunit enzyme, it …

[HTML][HTML] Interactions by disorder–a matter of context

K Bugge, I Brakti, CB Fernandes, JE Dreier… - Frontiers in Molecular …, 2020 - frontiersin.org
Living organisms depend on timely and organized interactions between proteins linked in
interactomes of high complexity. The recent increased precision by which protein …

Identification and quantification of proteoforms by mass spectrometry

LV Schaffer, RJ Millikin, RM Miller, LC Anderson… - …, 2019 - Wiley Online Library
A proteoform is a defined form of a protein derived from a given gene with a specific amino
acid sequence and localized post‐translational modifications. In top‐down proteomic …

MobiDB 3.0: more annotations for intrinsic disorder, conformational diversity and interactions in proteins

D Piovesan, F Tabaro, L Paladin, M Necci… - Nucleic acids …, 2018 - academic.oup.com
The MobiDB (URL: mobidb. bio. unipd. it) database of protein disorder and mobility
annotations has been significantly updated and upgraded since its last major renewal in …

How phosphorylation impacts intrinsically disordered proteins and their function

EA Newcombe, E Delaforge… - Essays in …, 2022 - portlandpress.com
Phosphorylation is the most common post-translational modification (PTM) in eukaryotes,
occurring particularly frequently in intrinsically disordered proteins (IDPs). These proteins …