Application of metagenomic techniques in mining enzymes from microbial communities for biofuel synthesis

MN Xing, XZ Zhang, H Huang - Biotechnology advances, 2012 - Elsevier
Feedstock for biofuel synthesis is transitioning to lignocelluosic biomass to address criticism
over competition between first generation biofuels and food production. As microbial …

A modular method for the extraction of DNA and RNA, and the separation of DNA pools from diverse environmental sample types

MA Lever, A Torti, P Eickenbusch, AB Michaud… - Frontiers in …, 2015 - frontiersin.org
A method for the extraction of nucleic acids from a wide range of environmental samples
was developed. This method consists of several modules, which can be individually …

Salmon aquaculture and antimicrobial resistance in the marine environment

AH Buschmann, A Tomova, A López, MA Maldonado… - 2012 - journals.plos.org
Antimicrobials used in salmon aquaculture pass into the marine environment. This could
have negative impacts on marine environmental biodiversity, and on terrestrial animal and …

Urbanization and waterborne pathogen emergence in low-income countries: where and how to conduct surveys?

A Bastaraud, P Cecchi, P Handschumacher… - International Journal of …, 2020 - mdpi.com
A major forthcoming sanitary issue concerns the apparition and spreading of drug-resistant
microorganisms, potentially threatening millions of humans. In low-income countries …

A comprehensive method for amplicon-based and metagenomic characterization of viruses, bacteria, and eukaryotes in freshwater samples

MI Uyaguari-Diaz, M Chan, BL Chaban, MA Croxen… - Microbiome, 2016 - Springer
Background Studies of environmental microbiota typically target only specific groups of
microorganisms, with most focusing on bacteria through taxonomic classification of 16S …

Cultivation of planktonic anaerobic ammonium oxidation (anammox) bacteria using membrane bioreactor

M Oshiki, T Awata, T Kindaichi, H Satoh… - Microbes and …, 2013 - jstage.jst.go.jp
Enrichment cultures of anaerobic ammonium oxidation (anammox) bacteria as planktonic
cell suspensions are essential for studying their ecophysiology and biochemistry, while their …

Characterization and quantitation of a novel β-lactamase gene found in a wastewater treatment facility and the surrounding coastal ecosystem

MI Uyaguari, EB Fichot, GI Scott… - Applied and …, 2011 - Am Soc Microbiol
Wastewater treatment plants (WWTPs) are engineered structures that collect, concentrate,
and treat human waste, ultimately releasing treated wastewater into local environments …

Metagenomics and Microbiome Engineering: Identification of Core Microbiome and Improvement of Rhizosphere

B Fazeli‐Nasab, N Mahdinezhad… - … Improving Crop Quality …, 2022 - Wiley Online Library
Plants have their microbiomes that live on the surface or within them. Microbiomes coexist
with plants, play a key role in Nature's food cycle, and help assimilate nutrients; they play an …

Abundance of class 1–3 integrons in South Carolina estuarine ecosystems under high and low levels of anthropogenic influence

MI Uyaguari, GI Scott, RS Norman - Marine pollution bulletin, 2013 - Elsevier
The impact of human activity on the spread of antibiotic resistant bacteria throughout coastal
estuarine ecosystems is not well characterized. It has been suggested that laterally …

An efficient method for high molecular weight bacterial DNA extraction suitable for shotgun metagenomics from skin swabs

IR Serghiou, D Baker, R Evans… - Microbial …, 2023 - microbiologyresearch.org
The human skin microbiome represents a variety of complex microbial ecosystems that play
a key role in host health. Molecular methods to study these communities have been …