Electrochemistry of nonconjugated proteins and glycoproteins. Toward sensors for biomedicine and glycomics

E Paleček, J Tkáč, M Bartosik, T Bertók… - Chemical …, 2015 - ACS Publications
The present advances in biology are related to progress in genomics, proteomics, and other
“-omics”, including glycomics, working with a large amount of data regarding human and …

SPR microscopy and its applications to high-throughput analyses of biomolecular binding events and their kinetics

CT Campbell, G Kim - Biomaterials, 2007 - Elsevier
Surface plasmon resonance (SPR) sensing has long been used to study biomolecular
binding events and their kinetics in a label-free way. This approach has recently been …

Analyzing a kinetic titration series using affinity biosensors

R Karlsson, PS Katsamba, H Nordin, E Pol… - Analytical …, 2006 - Elsevier
The classical method of measuring binding constants with affinity-based biosensors involves
testing several analyte concentrations over the same ligand surface and regenerating the …

The Experimental Uncertainty of Heterogeneous Public Ki Data

C Kramer, T Kalliokoski, P Gedeck… - Journal of medicinal …, 2012 - ACS Publications
The maximum achievable accuracy of in silico models depends on the quality of the
experimental data. Consequently, experimental uncertainty defines a natural upper limit to …

The maximal and current accuracy of rigorous protein-ligand binding free energy calculations

GA Ross, C Lu, G Scarabelli, SK Albanese… - Communications …, 2023 - nature.com
Computational techniques can speed up the identification of hits and accelerate the
development of candidate molecules for drug discovery. Among techniques for predicting …

Interactions between NKG2x immunoreceptors and HLA-E ligands display overlapping affinities and thermodynamics

BK Kaiser, F Barahmand-Pour, W Paulsene… - The Journal of …, 2005 - journals.aai.org
The NKG2x/CD94 family of C-type lectin-like immunoreceptors (x= A, B, C, E, and H)
mediates surveillance of MHC class Ia cell surface expression, often dysregulated during …

Kinetic analysis of a high-affinity antibody/antigen interaction performed by multiple Biacore users

PS Katsamba, I Navratilova, M Calderon-Cacia… - Analytical …, 2006 - Elsevier
To explore the reliability of Biacore-based assays, 22 study participants measured the
binding of prostate-specific antigen (PSA) to a monoclonal antibody (mAb). Each participant …

Protein thermal shifts to identify low molecular weight fragments

JK Kranz, C Schalk-Hihi - Methods in enzymology, 2011 - Elsevier
Measuring the strength of binding of low molecular weight ligands to a target protein is a
significant challenge to fragment-based drug discovery that must be solved. Thermal shift …

Kinetic and equilibrium binding characterization of aptamers to small molecules using a label-free, sensitive, and scalable platform

AL Chang, M McKeague, JC Liang… - Analytical …, 2014 - ACS Publications
Nucleic acid aptamers function as versatile sensing and targeting agents for analytical,
diagnostic, therapeutic, and gene-regulatory applications, but their limited characterization …

Exploring “one-shot” kinetics and small molecule analysis using the ProteOn XPR36 array biosensor

T Bravman, V Bronner, K Lavie, A Notcovich… - Analytical …, 2006 - Elsevier
A ProteOn XPR36 parallel array biosensor was used to characterize the binding kinetics of a
set of small molecule/enzyme interactions. Using one injection with the ProteOn's …