Branched chemically modified poly (A) tails enhance the translation capacity of mRNA

H Chen, D Liu, J Guo, A Aditham, Y Zhou, J Tian… - Nature …, 2024 - nature.com
Although messenger RNA (mRNA) has proved effective as a vaccine, its potential as a
general therapeutic modality is limited by its instability and low translation capacity. To …

Enhanced immunostimulatory activity of covalent DNA dendrons

Y Kawamoto, W Liu, JH Yum, S Park… - …, 2022 - Wiley Online Library
The present study focused on the design and synthesis of covalent DNA dendrons bearing
multivalent cytosine‐phosphate‐guanine oligodeoxynucleotides (CpG ODNs) that can …

Structural basis of lariat RNA recognition by the intron debranching enzyme Dbr1

EJ Montemayor, A Katolik, NE Clark… - Nucleic acids …, 2014 - academic.oup.com
The enzymatic processing of cellular RNA molecules requires selective recognition of
unique chemical and topological features. The unusual 2′, 5′-phosphodiester linkages in …

A homolog of lariat-debranching enzyme modulates turnover of branched RNA

SM Garrey, A Katolik, M Prekeris, X Li, K York… - Rna, 2014 - rnajournal.cshlp.org
Turnover of the branched RNA intermediates and products of pre-mRNA splicing is
mediated by the lariat-debranching enzyme Dbr1. We characterized a homolog of Dbr1 from …

Metal dependence and branched RNA cocrystal structures of the RNA lariat debranching enzyme Dbr1

NE Clark, A Katolik, KM Roberts… - Proceedings of the …, 2016 - National Acad Sciences
Intron lariats are circular, branched RNAs (bRNAs) produced during pre-mRNA splicing.
Their unusual chemical and topological properties arise from branch-point nucleotides …

Two-step mechanism and step-arrest mutants of Runella slithyformis NAD+-dependent tRNA 2′-phosphotransferase Tpt1

A Munir, L Abdullahu, MJ Damha, S Shuman - RNA, 2018 - rnajournal.cshlp.org
Tpt1 catalyzes the transfer of an internal 2′-monophosphate moiety (2′-PO4) from a
“branched” 2′-PO4 RNA splice junction to NAD+ to form a “clean” 2′-OH, 3′-5 …

Branch site bulge conformations in domain 6 determine functional sugar puckers in group II intron splicing

R Plangger, MA Juen, TP Hoernes… - Nucleic Acids …, 2019 - academic.oup.com
Although group II intron ribozymes are intensively studied the question how structural
dynamics affects splicing catalysis has remained elusive. We report for the first time that the …

Tetrahedral DNA conjugates from pentaerythritol-based polyazides

AI Ponomarenko, VA Brylev, KA Sapozhnikova… - Tetrahedron, 2016 - Elsevier
Branching points in DNA nanostructures are usually 3-or 4-way junctions maintained by
Watson-Crick non-covalent interactions. However, covalently bound DNA stars could …

Activation of human RNA lariat debranching enzyme Dbr1 by binding protein TTDN1 occurs though an intrinsically disordered C-terminal domain

NE Clark, A Katolik, P Gallant, A Welch… - Journal of Biological …, 2023 - ASBMB
In eukaryotic cells, the introns are excised from pre-mRNA by the spliceosome. These
introns typically have a lariat configuration due to the 2′-5′ phosphodiester bond between …

SplicePie: a novel analytical approach for the detection of alternative, non-sequential and recursive splicing

I Pulyakhina, I Gazzoli, PAC 't Hoen… - Nucleic acids …, 2015 - academic.oup.com
Alternative splicing is a powerful mechanism present in eukaryotic cells to obtain a wide
range of transcripts and protein isoforms from a relatively small number of genes. The …