Boolean nested canalizing functions: A comprehensive analysis
Y Li, JO Adeyeye, D Murrugarra, B Aguilar… - Theoretical Computer …, 2013 - Elsevier
Boolean network models of molecular regulatory networks have been used successfully in
computational systems biology. The Boolean functions that appear in published models tend …
computational systems biology. The Boolean functions that appear in published models tend …
Bounds on the average sensitivity of nested canalizing functions
Nested canalizing Boolean functions (NCF) play an important role in biologically motivated
regulatory networks and in signal processing, in particular describing stack filters. It has …
regulatory networks and in signal processing, in particular describing stack filters. It has …
Properties of Boolean networks and methods for their tests
JG Klotz, R Feuer, O Sawodny, M Bossert… - EURASIP Journal on …, 2013 - Springer
Transcriptional regulation networks are often modeled as Boolean networks. We discuss
certain properties of Boolean functions (BFs), which are considered as important in such …
certain properties of Boolean functions (BFs), which are considered as important in such …
Nested canalyzing functions and their average sensitivities
Y Li, JO Adeyeye, R Laubenbacher - arXiv preprint arXiv:1111.7217, 2011 - arxiv.org
In this paper, we obtain complete characterization for nested canalyzing functions (NCFs) by
obtaining its unique algebraic normal form (polynomial form). We introduce a new concept …
obtaining its unique algebraic normal form (polynomial form). We introduce a new concept …
On the sensitivity to noise of a Boolean function
MT Matache, V Matache - Journal of mathematical physics, 2009 - pubs.aip.org
In this paper we generate upper and lower bounds for the sensitivity to noise of a Boolean
function using relaxed assumptions on input choices and noise. The robustness of a …
function using relaxed assumptions on input choices and noise. The robustness of a …
Boolean networks for modeling gene regulation
C Wawra, M Kühl, HA Kestler - Mathematical analysis of …, 2009 - Wiley Online Library
Cells of living organisms and their interactions are highly complex biochemical systems. By
mutual interference genes build connected networks, called gene regulatory networks, to …
mutual interference genes build connected networks, called gene regulatory networks, to …
The order parameter of random Boolean networks for a certain class of distributions
S Schober, M Bossert - 7th International ITG Conference on …, 2008 - ieeexplore.ieee.org
Random Boolean networks are considered. It is shown that when using a certain class of
distributions on the set of Boolean functions to construct the network, the expectation of the …
distributions on the set of Boolean functions to construct the network, the expectation of the …
Jacobian-based feedback control of random boolean networks
S Chen, Y Hong - Proceedings of the 30th Chinese Control …, 2011 - ieeexplore.ieee.org
A feedback control scheme to shift the phase of random boolean networks (RBNs) from
disorder to order is proposed. A Jacobian matrix is calculated based on the state and …
disorder to order is proposed. A Jacobian matrix is calculated based on the state and …