[HTML][HTML] Chloroplast genomes: diversity, evolution, and applications in genetic engineering

H Daniell, CS Lin, M Yu, WJ Chang - Genome biology, 2016 - Springer
Chloroplasts play a crucial role in sustaining life on earth. The availability of over 800
sequenced chloroplast genomes from a variety of land plants has enhanced our …

Green giant—a tiny chloroplast genome with mighty power to produce high‐value proteins: history and phylogeny

H Daniell, S Jin, XG Zhu… - Plant biotechnology …, 2021 - Wiley Online Library
Free‐living cyanobacteria were entrapped by eukaryotic cells~ 2 billion years ago, ultimately
giving rise to chloroplasts. After a century of debate, the presence of chloroplast DNA was …

[HTML][HTML] Thirteen Camelliachloroplast genome sequences determined by high-throughput sequencing: genome structure and phylogenetic relationships

H Huang, C Shi, Y Liu, SY Mao, LZ Gao - BMC Evolutionary biology, 2014 - Springer
Background Camellia is an economically and phylogenetically important genus in the family
Theaceae. Owing to numerous hybridization and polyploidization, it is taxonomically and …

Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: the tortoise and the hare III

J Shaw, EB Lickey, EE Schilling… - American journal of …, 2007 - Wiley Online Library
Although the chloroplast genome contains many noncoding regions, relatively few have
been exploited for interspecific phylogenetic and intraspecific phylogeographic studies. In …

Reconstruction of the ancestral plastid genome in Geraniaceae reveals a correlation between genome rearrangements, repeats, and nucleotide substitution rates

ML Weng, JC Blazier, M Govindu… - Molecular biology and …, 2014 - academic.oup.com
Geraniaceae plastid genomes are highly rearranged, and each of the four genera already
sequenced in the family has a distinct genome organization. This study reports plastid …

[HTML][HTML] Comparative Analysis of the Complete Chloroplast Genomes of Five Quercus Species

Y Yang, T Zhou, D Duan, J Yang, L Feng… - Frontiers in plant …, 2016 - frontiersin.org
Quercus is considered economically and ecologically one of the most important genera in
the Northern Hemisphere. Oaks are taxonomically perplexing because of shared …

[HTML][HTML] Complete chloroplast genome of the genus Cymbidium: lights into the species identification, phylogenetic implications and population genetic analyses

JB Yang, M Tang, HT Li, ZR Zhang, DZ Li - BMC evolutionary biology, 2013 - Springer
Background Cymbidium orchids, including some 50 species, are the famous flowers, and
they possess high commercial value in the floricultural industry. Furthermore, the values of …

Extreme reconfiguration of plastid genomes in the angiosperm family Geraniaceae: rearrangements, repeats, and codon usage

MM Guisinger, JV Kuehl, JL Boore… - Molecular biology and …, 2011 - academic.oup.com
Geraniaceae plastid genomes (plastomes) have experienced a remarkable number of
genomic changes. The plastomes of Erodium texanum, Geranium palmatum, and Monsonia …

[HTML][HTML] Comparative chloroplast genomics: analyses including new sequences from the angiosperms Nuphar advena and Ranunculus macranthus

LA Raubeson, R Peery, TW Chumley, C Dziubek… - BMC genomics, 2007 - Springer
Background The number of completely sequenced plastid genomes available is growing
rapidly. This array of sequences presents new opportunities to perform comparative …

An update on chloroplast genomes

V Ravi, JP Khurana, AK Tyagi, P Khurana - Plant systematics and …, 2008 - Springer
Plant cells possess two more genomes besides the central nuclear genome: the
mitochondrial genome and the chloroplast genome (or plastome). Compared to the gigantic …