Histone post-translational modifications—cause and consequence of genome function

G Millán-Zambrano, A Burton, AJ Bannister… - Nature Reviews …, 2022 - nature.com
Much has been learned since the early 1960s about histone post-translational modifications
(PTMs) and how they affect DNA-templated processes at the molecular level. This …

[HTML][HTML] Establishment of H3K9-methylated heterochromatin and its functions in tissue differentiation and maintenance

J Padeken, SP Methot, SM Gasser - Nature Reviews Molecular Cell …, 2022 - nature.com
Heterochromatin is characterized by dimethylated or trimethylated histone H3 Lys9
(H3K9me2 or H3K9me3, respectively) and is found at transposable elements, satellite …

Pioneer transcription factors initiating gene network changes

KS Zaret - Annual review of genetics, 2020 - annualreviews.org
Pioneer transcription factors have the intrinsic biochemical ability to scan partial DNA
sequence motifs that are exposed on the surface of a nucleosome and thus access silent …

Biophysical forces mediated by respiration maintain lung alveolar epithelial cell fate

K Shiraishi, PP Shah, MP Morley, C Loebel, GT Santini… - Cell, 2023 - cell.com
Lungs undergo mechanical strain during breathing, but how these biophysical forces affect
cell fate and tissue homeostasis are unclear. We show that biophysical forces through …

[HTML][HTML] An atlas of lamina-associated chromatin across twelve human cell types reveals an intermediate chromatin subtype

PP Shah, KC Keough, K Gjoni, GT Santini, RJ Abdill… - Genome biology, 2023 - Springer
Background Association of chromatin with lamin proteins at the nuclear periphery has
emerged as a potential mechanism to coordinate cell type-specific gene expression and …

[HTML][HTML] Pathogenic LMNA variants disrupt cardiac lamina-chromatin interactions and de-repress alternative fate genes

PP Shah, W Lv, JH Rhoades, A Poleshko, D Abbey… - Cell Stem Cell, 2021 - cell.com
Pathogenic mutations in LAMIN A/C (LMNA) cause abnormal nuclear structure and
laminopathies. These diseases have myriad tissue-specific phenotypes, including dilated …

Lamina-associated domains: Tethers and looseners

SG Manzo, L Dauban, B van Steensel - Current Opinion in Cell Biology, 2022 - Elsevier
Lamina-associated domains (LADs) are large heterochromatic regions that are positioned at
the nuclear lamina (NL). A major question is how LAD–NL interactions are mediated and …

Functional mechanisms and abnormalities of the nuclear lamina

A Karoutas, A Akhtar - Nature Cell Biology, 2021 - nature.com
Alterations in nuclear shape are present in human diseases and ageing. A compromised
nuclear lamina is molecularly interlinked to altered chromatin functions and genomic …

[HTML][HTML] Mitotic chromosomes are self-entangled and disentangle through a topoisomerase-II-dependent two-stage exit from mitosis

EM Hildebrand, K Polovnikov, B Dekker, Y Liu… - Molecular cell, 2024 - cell.com
The topological state of chromosomes determines their mechanical properties, dynamics,
and function. Recent work indicated that interphase chromosomes are largely free of …

Cell cycle dynamics of lamina‐associated DNA

T van Schaik, M Vos, D Peric‐Hupkes, P HN Celie… - EMBO …, 2020 - embopress.org
In mammalian interphase nuclei, more than one thousand large genomic regions are
positioned at the nuclear lamina (NL). These lamina‐associated domains (LAD s) are …