Signalling ballet in space and time

BN Kholodenko, JF Hancock, W Kolch - Nature reviews Molecular cell …, 2010 - nature.com
Although we have amassed extensive catalogues of signalling network components, our
understanding of the spatiotemporal control of emergent network structures has lagged …

The endocytic matrix

G Scita, PP Di Fiore - Nature, 2010 - nature.com
Endocytosis has long been thought of as simply a way for cells to internalize nutrients and
membrane-associated molecules. But an explosive growth in knowledge has given a new …

Wave-pinning and cell polarity from a bistable reaction-diffusion system

Y Mori, A Jilkine, L Edelstein-Keshet - Biophysical journal, 2008 - cell.com
Motile eukaryotic cells polarize in response to external signals. Numerous mechanisms
have been suggested to account for this symmetry breaking and for the ensuing robust …

A comparison of mathematical models for polarization of single eukaryotic cells in response to guided cues

A Jilkine, L Edelstein-Keshet - PLoS computational biology, 2011 - journals.plos.org
Polarization, a primary step in the response of an individual eukaryotic cell to a spatial
stimulus, has attracted numerous theoretical treatments complementing experimental …

[HTML][HTML] Bistability in the Rac1, PAK, and RhoA signaling network drives actin cytoskeleton dynamics and cell motility switches

KM Byrne, N Monsefi, JC Dawson, A Degasperi… - Cell systems, 2016 - cell.com
Dynamic interactions between RhoA and Rac1, members of the Rho small GTPase family,
play a vital role in the control of cell migration. Using predictive mathematical modeling …

Mitotic trigger waves and the spatial coordination of the Xenopus cell cycle

JB Chang, JE Ferrell Jr - Nature, 2013 - nature.com
Despite the large size of the Xenopus laevis egg (approximately 1.2 mm diameter), a
fertilized egg rapidly proceeds through mitosis in a spatially coordinated fashion. Mitosis is …

Toll-like receptor signal transduction

J Krishnan, K Selvarajoo, M Tsuchiya, G Lee… - … & molecular medicine, 2007 - nature.com
Toll-like receptors (TLRs) are the archetypal pattern recognition receptors in sensing
exogenous pathogens. Activation of TLRs is a first line of defense of the immune system …

Design principles of regulatory networks: searching for the molecular algorithms of the cell

WA Lim, CM Lee, C Tang - Molecular cell, 2013 - cell.com
A challenge in biology is to understand how complex molecular networks in the cell execute
sophisticated regulatory functions. Here we explore the idea that there are common and …

Computational approaches for analyzing information flow in biological networks

B Kholodenko, MB Yaffe, W Kolch - Science signaling, 2012 - science.org
The advancements in “omics”(proteomics, genomics, lipidomics, and metabolomics)
technologies have yielded large inventories of genes, transcripts, proteins, and metabolites …

Dynamics of outer mitochondrial membrane permeabilization during apoptosis

M Rehm, HJ Huber, CT Hellwig, S Anguissola… - Cell Death & …, 2009 - nature.com
Individual cells within a population undergo apoptosis at distinct, apparently random time
points. By analyzing cellular mitotic history, we identified that sibling HeLa cell pairs, in …