Long-range enhancer–promoter contacts in gene expression control
S Schoenfelder, P Fraser - Nature Reviews Genetics, 2019 - nature.com
Spatiotemporal gene expression programmes are orchestrated by transcriptional
enhancers, which are key regulatory DNA elements that engage in physical contacts with …
enhancers, which are key regulatory DNA elements that engage in physical contacts with …
The role of 3D genome organization in development and cell differentiation
In eukaryotes, the genome does not exist as a linear molecule but instead is hierarchically
packaged inside the nucleus. This complex genome organization includes multiscale …
packaged inside the nucleus. This complex genome organization includes multiscale …
Towards a comprehensive catalogue of validated and target-linked human enhancers
The human gene catalogue is essentially complete, but we lack an equivalently vetted
inventory of bona fide human enhancers. Hundreds of thousands of candidate enhancers …
inventory of bona fide human enhancers. Hundreds of thousands of candidate enhancers …
The role of transcription in shaping the spatial organization of the genome
B van Steensel, EEM Furlong - Nature reviews Molecular cell biology, 2019 - nature.com
The spatial organization of the genome into compartments and topologically associated
domains can have an important role in the regulation of gene expression. But could gene …
domains can have an important role in the regulation of gene expression. But could gene …
Live-cell imaging reveals enhancer-dependent Sox2 transcription in the absence of enhancer proximity
Enhancers are important regulatory elements that can control gene activity across vast
genetic distances. However, the underlying nature of this regulation remains obscured …
genetic distances. However, the underlying nature of this regulation remains obscured …
A pliable mediator acts as a functional rather than an architectural bridge between promoters and enhancers
L El Khattabi, H Zhao, J Kalchschmidt, N Young… - Cell, 2019 - cell.com
While Mediator plays a key role in eukaryotic transcription, little is known about its
mechanism of action. This study combines CRISPR-Cas9 genetic screens, degron assays …
mechanism of action. This study combines CRISPR-Cas9 genetic screens, degron assays …
Evaluating enhancer function and transcription
Cell-type-and condition-specific profiles of gene expression require coordination between
protein-coding gene promoters and cis-regulatory sequences called enhancers. Enhancers …
protein-coding gene promoters and cis-regulatory sequences called enhancers. Enhancers …
DOT1L inhibition reveals a distinct subset of enhancers dependent on H3K79 methylation
L Godfrey, NT Crump, R Thorne, IJ Lau… - Nature …, 2019 - nature.com
Enhancer elements are a key regulatory feature of many important genes. Several general
features including the presence of specific histone modifications are used to demarcate …
features including the presence of specific histone modifications are used to demarcate …
Polymer simulations of heteromorphic chromatin predict the 3D folding of complex genomic loci
Chromatin folded into 3D macromolecular structures is often analyzed by chromosome
conformation capture (3C) and fluorescence in situ hybridization (FISH) techniques, but …
conformation capture (3C) and fluorescence in situ hybridization (FISH) techniques, but …
A tissue-specific self-interacting chromatin domain forms independently of enhancer-promoter interactions
JM Brown, NA Roberts, B Graham, D Waithe… - Nature …, 2018 - nature.com
Self-interacting chromatin domains encompass genes and their cis-regulatory elements;
however, the three-dimensional form a domain takes, whether this relies on enhancer …
however, the three-dimensional form a domain takes, whether this relies on enhancer …