Role of main RNA modifications in cancer: N6-methyladenosine, 5-methylcytosine, and pseudouridine

C Xue, Q Chu, Q Zheng, S Jiang, Z Bao, Y Su… - Signal transduction and …, 2022 - nature.com
Cancer is one of the major diseases threatening human life and health worldwide.
Epigenetic modification refers to heritable changes in the genetic material without any …

Celebrating wobble decoding: Half a century and still much is new

PF Agris, ER Eruysal, A Narendran, VYP Väre… - RNA biology, 2018 - Taylor & Francis
ABSTRACT A simple post-transcriptional modification of tRNA, deamination of adenosine to
inosine at the first, or wobble, position of the anticodon, inspired Francis Crick's Wobble …

MODOMICS: a database of RNA modification pathways. 2017 update

P Boccaletto, MA Machnicka, E Purta… - Nucleic acids …, 2018 - academic.oup.com
MODOMICS is a database of RNA modifications that provides comprehensive information
concerning the chemical structures of modified ribonucleosides, their biosynthetic pathways …

Using hybrid organic–inorganic surface technology to mitigate analyte interactions with metal surfaces in UHPLC

M DeLano, TH Walter, MA Lauber, M Gilar… - Analytical …, 2021 - ACS Publications
Interactions of analytes with metal surfaces in high-performance liquid chromatography
(HPLC) instruments and columns have been reported to cause deleterious effects ranging …

Bisulfite and nanopore sequencing for pseudouridine in RNA

CJ Burrows, AM Fleming - Accounts of Chemical Research, 2023 - ACS Publications
Conspectus Nucleophilic addition of bisulfite to pyrimidine bases has been known for a half
century, and the reaction has been in use for at least a quarter of a century for identifying 5 …

Nonessential tRNA and rRNA modifications impact the bacterial response to sub-MIC antibiotic stress

A Babosan, L Fruchard, E Krin, A Carvalho, D Mazel… - …, 2022 - academic.oup.com
Antimicrobial resistance develops as a major problem in infectious diseases treatment.
While antibiotic resistance mechanisms are usually studied using lethal antibiotic doses …

Ribosomal RNA modification enzymes stimulate large ribosome subunit assembly in E. coli

R Ero, M Leppik, K Reier, A Liiv… - Nucleic Acids …, 2024 - academic.oup.com
Ribosomal RNA modifications are introduced by specific enzymes during ribosome
assembly in bacteria. Deletion of individual modification enzymes has a minor effect on …

An NKX-COUP-TFII morphogenetic code directs mucosal endothelial addressin expression

TT Dinh, M Xiang, A Rajaraman, Y Wang… - Nature …, 2022 - nature.com
Immunoglobulin family and carbohydrate vascular addressins encoded by Madcam1 and
St6gal1 control lymphocyte homing into intestinal tissues, regulating immunity and …

RNAModMapper: RNA modification mapping software for analysis of liquid chromatography tandem mass spectrometry data

N Yu, PA Lobue, X Cao, PA Limbach - Analytical chemistry, 2017 - ACS Publications
Liquid chromatography tandem mass spectrometry (LC-MS/MS) has proven to be a powerful
analytical tool for the characterization of modified ribonucleic acids (RNAs). The typical …

Pseudouridines in RNAs: switching atoms means shifting paradigms

TY Lin, R Mehta, S Glatt - FEBS letters, 2021 - Wiley Online Library
The structure, stability, and function of various coding and noncoding RNAs are influenced
by chemical modifications. Pseudouridine (Ψ) is one of the most abundant post …