Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean
Marine planktonic eukaryotes play critical roles in global biogeochemical cycles and climate.
However, their poor representation in culture collections limits our understanding of the …
However, their poor representation in culture collections limits our understanding of the …
Diatoms and their microbiomes in complex and changing polar oceans
R Gilbertson, E Langan, T Mock - Frontiers in Microbiology, 2022 - frontiersin.org
Diatoms, a key group of polar marine microbes, support highly productive ocean
ecosystems. Like all life on earth, diatoms do not live in isolation, and they are therefore …
ecosystems. Like all life on earth, diatoms do not live in isolation, and they are therefore …
Multi-omics for studying and understanding polar life
Polar ecosystems are experiencing amongst the most rapid rates of regional warming on
Earth. Here, we discuss 'omics' approaches to investigate polar biodiversity, including the …
Earth. Here, we discuss 'omics' approaches to investigate polar biodiversity, including the …
Tiara: deep learning-based classification system for eukaryotic sequences
Motivation With a large number of metagenomic datasets becoming available, eukaryotic
metagenomics emerged as a new challenge. The proper classification of eukaryotic nuclear …
metagenomics emerged as a new challenge. The proper classification of eukaryotic nuclear …
Updated virophage taxonomy and distinction from polinton-like viruses
Virophages are small dsDNA viruses that hijack the machinery of giant viruses during the co-
infection of a protist (ie, microeukaryotic) host and represent an exceptional case of …
infection of a protist (ie, microeukaryotic) host and represent an exceptional case of …
Eukaryotic genomes from a global metagenomic data set illuminate trophic modes and biogeography of ocean plankton
Metagenomics is a powerful method for interpreting the ecological roles and physiological
capabilities of mixed microbial communities. Yet, many tools for processing metagenomic …
capabilities of mixed microbial communities. Yet, many tools for processing metagenomic …
Bio-organic fertilizer promotes pear yield by shaping the rhizosphere microbiome composition and functions
Z Wang, T Yang, X Mei, N Wang, X Li… - Microbiology …, 2022 - Am Soc Microbiol
Bio-organic fertilizers (BOF) containing both organic amendments and beneficial
microorganisms have been consistently shown to improve soils fertility and yield. However …
microorganisms have been consistently shown to improve soils fertility and yield. However …
Differential global distribution of marine picocyanobacteria gene clusters reveals distinct niche-related adaptive strategies
The ever-increasing number of available microbial genomes and metagenomes provides
new opportunities to investigate the links between niche partitioning and genome evolution …
new opportunities to investigate the links between niche partitioning and genome evolution …
Multiomics in the central Arctic Ocean for benchmarking biodiversity change
T Mock, W Boulton, JP Balmonte, K Barry… - PLoS …, 2022 - journals.plos.org
Multiomics approaches need to be applied in the central Arctic Ocean to benchmark
biodiversity change and to identify novel species and their genes. As part of MOSAiC …
biodiversity change and to identify novel species and their genes. As part of MOSAiC …
VEBA: a modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes
JL Espinoza, CL Dupont - BMC bioinformatics, 2022 - Springer
Background With the advent of metagenomics, the importance of microorganisms and how
their interactions are relevant to ecosystem resilience, sustainability, and human health has …
their interactions are relevant to ecosystem resilience, sustainability, and human health has …