Protein kinetic stability

JM Sanchez-Ruiz - Biophysical chemistry, 2010 - Elsevier
The relevance of protein stability for biological function and molecular evolution is widely
recognized. Protein stability, however, comes in two flavours: thermodynamic stability, which …

Advances in protein structure prediction and de novo protein design: A review

CA Floudas, HK Fung, SR McAllister… - Chemical Engineering …, 2006 - Elsevier
This review provides an exposition to the important problems of (i) structure prediction in
protein folding and (ii) de novo protein design. The recent advances in protein folding are …

How fast-folding proteins fold

K Lindorff-Larsen, S Piana, RO Dror, DE Shaw - Science, 2011 - science.org
An outstanding challenge in the field of molecular biology has been to understand the
process by which proteins fold into their characteristic three-dimensional structures. Here …

Folding simulations for proteins with diverse topologies are accessible in days with a physics-based force field and implicit solvent

H Nguyen, J Maier, H Huang, V Perrone… - Journal of the …, 2014 - ACS Publications
The millisecond time scale needed for molecular dynamics simulations to approach the
quantitative study of protein folding is not yet routine. One approach to extend the simulation …

[图书][B] Protein folding kinetics: biophysical methods

B Nölting - 2005 - books.google.com
Protein Folding Kinetics-Biophysical Methods (2nd Edition) gives a deep insight into the
principles and concepts of the kinetic and structural resolution of fast chemical and …

Temperature-jump solution X-ray scattering reveals distinct motions in a dynamic enzyme

MC Thompson, BA Barad, AM Wolff, H Sun Cho… - Nature …, 2019 - nature.com
Correlated motions of proteins are critical to function, but these features are difficult to
resolve using traditional structure determination techniques. Time-resolved X-ray methods …

Ultrafast folding of α3D: A de novo designed three-helix bundle protein

Y Zhu, DOV Alonso, K Maki… - Proceedings of the …, 2003 - National Acad Sciences
Here, we describe the folding/unfolding kinetics of α3D, a small designed three-helix bundle.
Both IR temperature jump and ultrafast fluorescence mixing methods reveal a single …

[HTML][HTML] The highly cooperative folding of small naturally occurring proteins is likely the result of natural selection

AL Watters, P Deka, C Corrent, D Callender, G Varani… - Cell, 2007 - cell.com
To illuminate the evolutionary pressure acting on the folding free energy landscapes of
naturally occurring proteins, we have systematically characterized the folding free energy …

Fast protein folding kinetics

H Gelman, M Gruebele - Quarterly Reviews of Biophysics, 2014 - cambridge.org
Fast-folding proteins have been a major focus of computational and experimental study
because they are accessible to both techniques: they are small and fast enough to be …

Advances in computational protein design

S Park, X Yang, JG Saven - Current opinion in structural biology, 2004 - Elsevier
Computational protein design continues to experience a variety of methodological
advances. Several improvements have been suggested for the objective functions used to …