The maternal-to-zygotic transition revisited

NL Vastenhouw, WX Cao, HD Lipshitz - Development, 2019 - journals.biologists.com
The development of animal embryos is initially directed by maternal gene products. Then,
during the maternal-to-zygotic transition (MZT), developmental control is handed to the …

Zygotic genome activation during the maternal-to-zygotic transition

MT Lee, AR Bonneau, AJ Giraldez - Annual review of cell and …, 2014 - annualreviews.org
Embryogenesis depends on a highly coordinated cascade of genetically encoded events. In
animals, maternal factors contributed by the egg cytoplasm initially control development …

[PDF][PDF] Pervasive, coordinated protein-level changes driven by transcript isoform switching during meiosis

Z Cheng, GM Otto, EN Powers, A Keskin, P Mertins… - Cell, 2018 - cell.com
To better understand the gene regulatory mechanisms that program developmental
processes, we carried out simultaneous genome-wide measurements of mRNA, translation …

Epigenetics in teleost fish: From molecular mechanisms to physiological phenotypes

C Best, H Ikert, DJ Kostyniuk, PM Craig… - … and Physiology Part B …, 2018 - Elsevier
While the field of epigenetics is increasingly recognized to contribute to the emergence of
phenotypes in mammalian research models across different developmental and …

[HTML][HTML] miR-430 regulates zygotic mRNA during zebrafish embryogenesis

D Baia Amaral, R Egidy, A Perera, AA Bazzini - Genome Biology, 2024 - Springer
Background Early embryonic developmental programs are guided by the coordinated
interplay between maternally inherited and zygotically manufactured RNAs and proteins …

[HTML][HTML] High-resolution analysis of cell-state transitions in yeast suggests widespread transcriptional tuning by alternative starts

M Chia, C Li, S Marques, V Pelechano, NM Luscombe… - Genome biology, 2021 - Springer
Background The start and end sites of messenger RNAs (TSSs and TESs) are highly
regulated, often in a cell-type-specific manner. Yet the contribution of transcript diversity in …

Identifying (non‐) coding RNAs and small peptides: Challenges and opportunities

A Pauli, E Valen, AF Schier - Bioessays, 2015 - Wiley Online Library
Over the past decade, high‐throughput studies have identified many novel transcripts. While
their existence is undisputed, their coding potential and functionality have remained …

[PDF][PDF] Joint profiling of gene expression and chromatin accessibility during amphioxus development at single-cell resolution

P Ma, X Liu, Z Xu, H Liu, X Ding, Z Huang, C Shi… - Cell Reports, 2022 - cell.com
Vertebrate evolution was accompanied by two rounds of whole-genome duplication
followed by functional divergence in terms of regulatory circuits and gene expression …

Transcription of a 5'extended mRNA isoform directs dynamic chromatin changes and interference of a downstream promoter

M Chia, A Tresenrider, J Chen, G Spedale… - Elife, 2017 - elifesciences.org
Cell differentiation programs require dynamic regulation of gene expression. During meiotic
prophase in Saccharomyces cerevisiae, expression of the kinetochore complex subunit …

Sex-specific splicing occurs genome-wide during early Drosophila embryogenesis

M Ray, AM Conard, J Urban, P Mahableshwarkar… - Elife, 2023 - elifesciences.org
Sex-specific splicing is an essential process that regulates sex determination and drives
sexual dimorphism. Yet, how early in development widespread sex-specific transcript …