Exploration of ultralarge compound collections for drug discovery

WA Warr, MC Nicklaus, CA Nicolaou… - Journal of Chemical …, 2022 - ACS Publications
Designing new medicines more cheaply and quickly is tightly linked to the quest of exploring
chemical space more widely and efficiently. Chemical space is monumentally large, but …

[HTML][HTML] Navigating large chemical spaces in early-phase drug discovery

M Korn, C Ehrt, F Ruggiu, M Gastreich… - Current Opinion in …, 2023 - Elsevier
The size of actionable chemical spaces is surging, owing to a variety of novel techniques,
both computational and experimental. As a consequence, novel molecular matter is now at …

Graph isomorphism-based algorithm for cross-checking chemical and crystallographic descriptions

A Merkys, A Vaitkus, A Grybauskas… - Journal of …, 2023 - Springer
Published reports of chemical compounds often contain multiple machine-readable
descriptions which may supplement each other in order to yield coherent and complete …

Deciphering the lexicon of protein targets: a review on multifaceted drug discovery in the era of artificial intelligence

S Nandi, S Bhaduri, D Das, P Ghosh… - Molecular …, 2024 - ACS Publications
Understanding protein sequence and structure is essential for understanding protein–
protein interactions (PPIs), which are essential for many biological processes and diseases …

ChemoDOTS: a web server to design chemistry-driven focused libraries

L Hoffer, G Charifi-Hoareau, S Barelier… - Nucleic Acids …, 2024 - academic.oup.com
In drug discovery, the successful optimization of an initial hit compound into a lead molecule
requires multiple cycles of chemical modification. Consequently, there is a need to efficiently …

Automatic extraction of FAIR data from publications using LLM

L Patiny, G Godin - 2023 - chemrxiv.org
Since the beginning of modern science, researchers have used a specific format to
communicate their findings in a standardized language. Such formats help to ensure that …

Special issue on reaction informatics and chemical space

M Rarey, MC Nicklaus, W Warr - Journal of Chemical Information …, 2022 - ACS Publications
Cheminformaticians live in exciting times as all scientist do who are working at the
interface of natural and computer sciences. Digital data collections increase in size and …

Fast Substructure Search in Combinatorial Library Spaces

T Liphardt, T Sander - Journal of Chemical Information and …, 2023 - ACS Publications
We present an efficient algorithm for substructure search in combinatorial libraries defined
by synthons, ie, substructures with connection points. Our method improves on existing …

SpaceGrow: efficient shape-based virtual screening of billion-sized combinatorial fragment spaces

SMN Hönig, F Flachsenberg, C Ehrt… - Journal of Computer …, 2024 - Springer
The growing size of make-on-demand chemical libraries is posing new challenges to
cheminformatics. These ultra-large chemical libraries became too large for exhaustive …

Automatic extraction of FAIR data from publications using LLM

G Godin - 2023 - chemrxiv.org
Since the beginning of modern science, researchers have used a specific format to
communicate their findings in a standardized language. Such formats help to ensure that …