Exploration of ultralarge compound collections for drug discovery
WA Warr, MC Nicklaus, CA Nicolaou… - Journal of Chemical …, 2022 - ACS Publications
Designing new medicines more cheaply and quickly is tightly linked to the quest of exploring
chemical space more widely and efficiently. Chemical space is monumentally large, but …
chemical space more widely and efficiently. Chemical space is monumentally large, but …
[HTML][HTML] Navigating large chemical spaces in early-phase drug discovery
The size of actionable chemical spaces is surging, owing to a variety of novel techniques,
both computational and experimental. As a consequence, novel molecular matter is now at …
both computational and experimental. As a consequence, novel molecular matter is now at …
Graph isomorphism-based algorithm for cross-checking chemical and crystallographic descriptions
Published reports of chemical compounds often contain multiple machine-readable
descriptions which may supplement each other in order to yield coherent and complete …
descriptions which may supplement each other in order to yield coherent and complete …
Deciphering the lexicon of protein targets: a review on multifaceted drug discovery in the era of artificial intelligence
Understanding protein sequence and structure is essential for understanding protein–
protein interactions (PPIs), which are essential for many biological processes and diseases …
protein interactions (PPIs), which are essential for many biological processes and diseases …
ChemoDOTS: a web server to design chemistry-driven focused libraries
L Hoffer, G Charifi-Hoareau, S Barelier… - Nucleic Acids …, 2024 - academic.oup.com
In drug discovery, the successful optimization of an initial hit compound into a lead molecule
requires multiple cycles of chemical modification. Consequently, there is a need to efficiently …
requires multiple cycles of chemical modification. Consequently, there is a need to efficiently …
Special issue on reaction informatics and chemical space
M Rarey, MC Nicklaus, W Warr - Journal of Chemical Information …, 2022 - ACS Publications
Cheminformaticians live in exciting times as all scientist do who are working at the
interface of natural and computer sciences. Digital data collections increase in size and …
interface of natural and computer sciences. Digital data collections increase in size and …
Fast Substructure Search in Combinatorial Library Spaces
T Liphardt, T Sander - Journal of Chemical Information and …, 2023 - ACS Publications
We present an efficient algorithm for substructure search in combinatorial libraries defined
by synthons, ie, substructures with connection points. Our method improves on existing …
by synthons, ie, substructures with connection points. Our method improves on existing …
SpaceGrow: efficient shape-based virtual screening of billion-sized combinatorial fragment spaces
SMN Hönig, F Flachsenberg, C Ehrt… - Journal of Computer …, 2024 - Springer
The growing size of make-on-demand chemical libraries is posing new challenges to
cheminformatics. These ultra-large chemical libraries became too large for exhaustive …
cheminformatics. These ultra-large chemical libraries became too large for exhaustive …
Automatic extraction of FAIR data from publications using LLM
G Godin - 2023 - chemrxiv.org
Since the beginning of modern science, researchers have used a specific format to
communicate their findings in a standardized language. Such formats help to ensure that …
communicate their findings in a standardized language. Such formats help to ensure that …