A guide to 13C metabolic flux analysis for the cancer biologist

MR Antoniewicz - Experimental & molecular medicine, 2018 - nature.com
Cancer metabolism is significantly altered from normal cellular metabolism allowing cancer
cells to adapt to changing microenvironments and maintain high rates of proliferation. In the …

A guide to metabolic flux analysis in metabolic engineering: Methods, tools and applications

MR Antoniewicz - Metabolic engineering, 2021 - Elsevier
The field of metabolic engineering is primarily concerned with improving the biological
production of value-added chemicals, fuels and pharmaceuticals through the design …

Metabolite concentrations, fluxes and free energies imply efficient enzyme usage

JO Park, SA Rubin, YF Xu, D Amador-Noguez… - Nature chemical …, 2016 - nature.com
In metabolism, available free energy is limited and must be divided across pathway steps to
maintain a negative Δ G throughout. For each reaction, Δ G is log proportional both to a …

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2. 0

J Schellenberger, R Que, RMT Fleming, I Thiele… - Nature protocols, 2011 - nature.com
Over the past decade, a growing community of researchers has emerged around the use of
constraint-based reconstruction and analysis (COBRA) methods to simulate, analyze and …

Metabolomics—the link between genotypes and phenotypes

O Fiehn - Functional genomics, 2002 - Springer
Metabolites are the end products of cellular regulatory processes, and their levels can be
regarded as the ultimate response of biological systems to genetic or environmental …

13C metabolic flux analysis

W Wiechert - Metabolic engineering, 2001 - Elsevier
Metabolic flux analysis using 13C-labeled substrates has become an important tool in
metabolic engineering. It allows the detailed quantification of all intracellular fluxes in the …

13C-based metabolic flux analysis

N Zamboni, SM Fendt, M Rühl, U Sauer - Nature protocols, 2009 - nature.com
Stable isotope, and in particular 13C-based flux analysis, is the exclusive approach to
experimentally quantify the integrated responses of metabolic networks. Here we describe a …

Methods and advances in metabolic flux analysis: a mini-review

MR Antoniewicz - Journal of Industrial Microbiology and …, 2015 - academic.oup.com
Metabolic flux analysis (MFA) is one of the pillars of metabolic engineering. Over the past
three decades, it has been widely used to quantify intracellular metabolic fluxes in both …

Elementary metabolite units (EMU): a novel framework for modeling isotopic distributions

MR Antoniewicz, JK Kelleher, G Stephanopoulos - Metabolic engineering, 2007 - Elsevier
Metabolic flux analysis (MFA) has emerged as a tool of great significance for metabolic
engineering and mammalian physiology. An important limitation of MFA, as carried out via …

Lost in transition: start-up of glycolysis yields subpopulations of nongrowing cells

JH Van Heerden, MT Wortel, FJ Bruggeman… - Science, 2014 - science.org
Introduction Cells use multilayered regulatory systems to respond adequately to changing
environments or perturbations. Failure in regulation underlies cellular malfunctioning, loss of …