Eleven grand challenges in single-cell data science

D Lähnemann, J Köster, E Szczurek, DJ McCarthy… - Genome biology, 2020 - Springer
The recent boom in microfluidics and combinatorial indexing strategies, combined with low
sequencing costs, has empowered single-cell sequencing technology. Thousands—or even …

[HTML][HTML] Biomarkers of gastric cancer: Current topics and future perspective

T Matsuoka, M Yashiro - World journal of gastroenterology, 2018 - ncbi.nlm.nih.gov
Gastric cancer (GC) is one of the most prevalent malignant types in the world and an
aggressive disease with a poor 5-year survival. This cancer is biologically and genetically …

Single-cell genome sequencing: current state of the science

C Gawad, W Koh, SR Quake - Nature Reviews Genetics, 2016 - nature.com
The field of single-cell genomics is advancing rapidly and is generating many new insights
into complex biological systems, ranging from the diversity of microbial ecosystems to the …

Intersection of diverse neuronal genomes and neuropsychiatric disease: The Brain Somatic Mosaicism Network

MJ McConnell, JV Moran, A Abyzov, S Akbarian, T Bae… - Science, 2017 - science.org
BACKGROUND Elucidating the genetic architecture of neuropsychiatric disorders remains a
major scientific and medical challenge. Emerging genomic technologies now permit the …

EBV-associated diseases: Current therapeutics and emerging technologies

S Chakravorty, B Afzali, M Kazemian - Frontiers in Immunology, 2022 - frontiersin.org
EBV is a prevalent virus, infecting> 90% of the world's population. This is an oncogenic virus
that causes~ 200,000 cancer-related deaths annually. It is, in addition, a significant …

Methods to improve the accuracy of next-generation sequencing

C Cheng, Z Fei, P Xiao - Frontiers in bioengineering and …, 2023 - frontiersin.org
Next-generation sequencing (NGS) is present in all fields of life science, which has greatly
promoted the development of basic research while being gradually applied in clinical …

Separation and parallel sequencing of the genomes and transcriptomes of single cells using G&T-seq

IC Macaulay, MJ Teng, W Haerty, P Kumar… - Nature protocols, 2016 - nature.com
Parallel sequencing of a single cell's genome and transcriptome provides a powerful tool for
dissecting genetic variation and its relationship with gene expression. Here we present a …

Advances and applications of single‐cell omics technologies in plant research

Y Mo, Y Jiao - The Plant Journal, 2022 - Wiley Online Library
Single‐cell sequencing approaches reveal the intracellular dynamics of individual cells and
answer biological questions with high‐dimensional catalogs of millions of cells, including …

Detecting somatic mutations in normal cells

Y Dou, HD Gold, LJ Luquette, PJ Park - Trends in Genetics, 2018 - cell.com
Somatic mutations have been studied extensively in the context of cancer. Recent studies
have demonstrated that high-throughput sequencing data can be used to detect somatic …

Tumor heterogeneity, single-cell sequencing, and drug resistance

F Schmidt, T Efferth - Pharmaceuticals, 2016 - mdpi.com
Tumor heterogeneity has been compared with Darwinian evolution and survival of the fittest.
The evolutionary ecosystem of tumors consisting of heterogeneous tumor cell populations …