Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review
P Csermely, T Korcsmáros, HJM Kiss, G London… - Pharmacology & …, 2013 - Elsevier
Despite considerable progress in genome-and proteome-based high-throughput screening
methods and in rational drug design, the increase in approved drugs in the past decade did …
methods and in rational drug design, the increase in approved drugs in the past decade did …
PubChem applications in drug discovery: a bibliometric analysis
Highlights•We investigated PubChem applications by a bibliometric analysis of research
articles.•PubChem resource was accessed globally for various research areas.•PubChem …
articles.•PubChem resource was accessed globally for various research areas.•PubChem …
Chemical space: limits, evolution and modelling of an object bigger than our universal library
G Restrepo - Digital Discovery, 2022 - pubs.rsc.org
Chemical space entails substances endowed with a notion of nearness that comes in two
flavours: similarity and synthetic reachability. What is the maximum size for the chemical …
flavours: similarity and synthetic reachability. What is the maximum size for the chemical …
Chemical space networks: a powerful new paradigm for the description of chemical space
GM Maggiora, J Bajorath - Journal of computer-aided molecular design, 2014 - Springer
The concept of chemical space is playing an increasingly important role in many areas of
chemical research, especially medicinal chemistry and chemical biology. It is generally …
chemical research, especially medicinal chemistry and chemical biology. It is generally …
Design of chemical space networks using a Tanimoto similarity variant based upon maximum common substructures
B Zhang, M Vogt, GM Maggiora, J Bajorath - Journal of computer-aided …, 2015 - Springer
Chemical space networks (CSNs) have recently been introduced as an alternative to other
coordinate-free and coordinate-based chemical space representations. In CSNs, nodes …
coordinate-free and coordinate-based chemical space representations. In CSNs, nodes …
iSIM: instant similarity
K López-Pérez, TD Kim, RA Miranda-Quintana - Digital Discovery, 2024 - pubs.rsc.org
The quantification of molecular similarity has been present since the beginning of
cheminformatics. Although several similarity indices and molecular representations have …
cheminformatics. Although several similarity indices and molecular representations have …
Design and characterization of chemical space networks for different compound data sets
M Zwierzyna, M Vogt, GM Maggiora… - Journal of computer-aided …, 2015 - Springer
Abstract Chemical Space Networks (CSNs) are generated for different compound data sets
on the basis of pairwise similarity relationships. Such networks are thought to complement …
on the basis of pairwise similarity relationships. Such networks are thought to complement …
Lessons learned from the design of chemical space networks and opportunities for new applications
M Vogt, D Stumpfe, GM Maggiora, J Bajorath - Journal of computer-aided …, 2016 - Springer
The concept of chemical space is of fundamental relevance in chemical informatics and
computer-aided drug discovery. In a series of articles published in the Journal of Computer …
computer-aided drug discovery. In a series of articles published in the Journal of Computer …
Design of chemical space networks on the basis of Tversky similarity
M Wu, M Vogt, GM Maggiora, J Bajorath - Journal of computer-aided …, 2016 - Springer
Chemical space networks (CSNs) have been introduced as a coordinate-free representation
of chemical space. In CSNs, nodes represent compounds and edges pairwise similarity …
of chemical space. In CSNs, nodes represent compounds and edges pairwise similarity …
Comparison of bioactive chemical space networks generated using substructure-and fingerprint-based measures of molecular similarity
B Zhang, M Vogt, GM Maggiora, J Bajorath - Journal of computer-aided …, 2015 - Springer
Chemical space networks (CSNs) have recently been introduced as a conceptual alternative
to coordinate-based representations of chemical space. CSNs were initially designed as …
to coordinate-based representations of chemical space. CSNs were initially designed as …