Artificial intelligence for drug discovery: Resources, methods, and applications

W Chen, X Liu, S Zhang, S Chen - Molecular Therapy-Nucleic Acids, 2023 - cell.com
Conventional wet laboratory testing, validations, and synthetic procedures are costly and
time-consuming for drug discovery. Advancements in artificial intelligence (AI) techniques …

Machine learning approaches and databases for prediction of drug–target interaction: a survey paper

M Bagherian, E Sabeti, K Wang… - Briefings in …, 2021 - academic.oup.com
The task of predicting the interactions between drugs and targets plays a key role in the
process of drug discovery. There is a need to develop novel and efficient prediction …

Pre-training molecular graph representation with 3d geometry

S Liu, H Wang, W Liu, J Lasenby, H Guo… - arXiv preprint arXiv …, 2021 - arxiv.org
Molecular graph representation learning is a fundamental problem in modern drug and
material discovery. Molecular graphs are typically modeled by their 2D topological …

[HTML][HTML] Predicting commercially available antiviral drugs that may act on the novel coronavirus (SARS-CoV-2) through a drug-target interaction deep learning model

BR Beck, B Shin, Y Choi, S Park, K Kang - Computational and structural …, 2020 - Elsevier
The infection of a novel coronavirus found in Wuhan of China (SARS-CoV-2) is rapidly
spreading, and the incidence rate is increasing worldwide. Due to the lack of effective …

A unified drug–target interaction prediction framework based on knowledge graph and recommendation system

Q Ye, CY Hsieh, Z Yang, Y Kang, J Chen, D Cao… - Nature …, 2021 - nature.com
Prediction of drug-target interactions (DTI) plays a vital role in drug development in various
areas, such as virtual screening, drug repurposing and identification of potential drug side …

GraphDTA: predicting drug–target binding affinity with graph neural networks

T Nguyen, H Le, TP Quinn, T Nguyen, TD Le… - …, 2021 - academic.oup.com
The development of new drugs is costly, time consuming and often accompanied with safety
issues. Drug repurposing can avoid the expensive and lengthy process of drug development …

DeepPurpose: a deep learning library for drug–target interaction prediction

K Huang, T Fu, LM Glass, M Zitnik, C Xiao… - Bioinformatics, 2020 - academic.oup.com
Accurate prediction of drug–target interactions (DTI) is crucial for drug discovery. Recently,
deep learning (DL) models for show promising performance for DTI prediction. However …

DeepDTA: deep drug–target binding affinity prediction

H Öztürk, A Özgür, E Ozkirimli - Bioinformatics, 2018 - academic.oup.com
Motivation The identification of novel drug–target (DT) interactions is a substantial part of the
drug discovery process. Most of the computational methods that have been proposed to …

MolTrans: molecular interaction transformer for drug–target interaction prediction

K Huang, C Xiao, LM Glass, J Sun - Bioinformatics, 2021 - academic.oup.com
Motivation Drug–target interaction (DTI) prediction is a foundational task for in-silico drug
discovery, which is costly and time-consuming due to the need of experimental search over …

Counting on natural products for drug design

T Rodrigues, D Reker, P Schneider, G Schneider - Nature chemistry, 2016 - nature.com
Natural products and their molecular frameworks have a long tradition as valuable starting
points for medicinal chemistry and drug discovery. Recently, there has been a revitalization …