[HTML][HTML] Evolution of the human nervous system function, structure, and development

AMM Sousa, KA Meyer, G Santpere, FO Gulden… - Cell, 2017 - cell.com
The nervous system—in particular, the brain and its cognitive abilities—is among humans'
most distinctive and impressive attributes. How the nervous system has changed in the …

The alternative role of DNA methylation in splicing regulation

GL Maor, A Yearim, G Ast - Trends in Genetics, 2015 - cell.com
Although DNA methylation was originally thought to only affect transcription, emerging
evidence shows that it also regulates alternative splicing. Exons, and especially splice sites …

[HTML][HTML] DNA methylation age of human tissues and cell types

S Horvath - Genome biology, 2013 - Springer
Background It is not yet known whether DNA methylation levels can be used to accurately
predict age across a broad spectrum of human tissues and cell types, nor whether the …

[HTML][HTML] Differential DNA methylation in purified human blood cells: implications for cell lineage and studies on disease susceptibility

LE Reinius, N Acevedo, M Joerink, G Pershagen… - PloS one, 2012 - journals.plos.org
Methylation of cytosines at CpG sites is a common epigenetic DNA modification that can be
measured by a large number of methods, now even in a genome-wide manner for hundreds …

Interpreting noncoding genetic variation in complex traits and human disease

LD Ward, M Kellis - Nature biotechnology, 2012 - nature.com
Association studies provide genome-wide information about the genetic basis of complex
disease, but medical research has focused primarily on protein-coding variants, owing to the …

[HTML][HTML] Cigarette smoking and DNA methylation

KWK Lee, Z Pausova - Frontiers in genetics, 2013 - frontiersin.org
DNA methylation is the most studied epigenetic modification, capable of controlling gene
expression in the contexts of normal traits or diseases. It is highly dynamic during early …

Comparative studies of gene expression and the evolution of gene regulation

IG Romero, I Ruvinsky, Y Gilad - Nature Reviews Genetics, 2012 - nature.com
The hypothesis that differences in gene regulation have an important role in speciation and
adaptation is more than 40 years old. With the advent of new sequencing technologies, we …

Two-step epigenetic Mendelian randomization: a strategy for establishing the causal role of epigenetic processes in pathways to disease

CL Relton, G Davey Smith - International journal of …, 2012 - academic.oup.com
The burgeoning interest in the field of epigenetics has precipitated the need to develop
approaches to strengthen causal inference when considering the role of epigenetic …

Removing technical variability in RNA-seq data using conditional quantile normalization

KD Hansen, RA Irizarry, Z Wu - Biostatistics, 2012 - academic.oup.com
The ability to measure gene expression on a genome-wide scale is one of the most
promising accomplishments in molecular biology. Microarrays, the technology that first …

Prenatal maternal stress predicts methylation of genes regulating the hypothalamic–pituitary–adrenocortical system in mothers and newborns in the Democratic …

DA Kertes, HS Kamin, DA Hughes… - Child …, 2016 - Wiley Online Library
Exposure to stress early in life permanently shapes activity of the hypothalamic–pituitary–
adrenocortical (HPA) axis and the brain. Prenatally, glucocorticoids pass through the …