[HTML][HTML] 3′-end processing of eukaryotic mRNA: machinery, regulation, and impact on gene expression

V Boreikaitė, LA Passmore - Annual review of biochemistry, 2023 - annualreviews.org
Formation of the 3′ end of a eukaryotic mRNA is a key step in the production of a mature
transcript. This process is mediated by a number of protein factors that cleave the pre …

RNA-binding proteins: modular design for efficient function

BM Lunde, C Moore, G Varani - Nature reviews Molecular cell biology, 2007 - nature.com
Many RNA-binding proteins have modular structures and are composed of multiple repeats
of just a few basic domains that are arranged in various ways to satisfy their diverse …

[HTML][HTML] A deep neural network for predicting and engineering alternative polyadenylation

N Bogard, J Linder, AB Rosenberg, G Seelig - Cell, 2019 - cell.com
Alternative polyadenylation (APA) is a major driver of transcriptome diversity in human cells.
Here, we use deep learning to predict APA from DNA sequence alone. We trained our …

The RNA recognition motif, a plastic RNA‐binding platform to regulate post‐transcriptional gene expression

C Maris, C Dominguez, FHT Allain - The FEBS journal, 2005 - Wiley Online Library
The RNA recognition motif (RRM), also known as RNA‐binding domain (RBD) or
ribonucleoprotein domain (RNP) is one of the most abundant protein domains in eukaryotes …

[HTML][HTML] Genome-wide analysis of pre-mRNA 3′ end processing reveals a decisive role of human cleavage factor I in the regulation of 3′ UTR length

G Martin, AR Gruber, W Keller, M Zavolan - Cell reports, 2012 - cell.com
Through alternative polyadenylation, human mRNAs acquire longer or shorter 3′
untranslated regions, the latter typically associated with higher transcript stability and …

In silico analyses on the comparative sensing of SARS‐CoV‐2 mRNA by the intracellular TLRs of humans

A Choudhury, NC Das, R Patra… - Journal of Medical …, 2021 - Wiley Online Library
Abstract The coronavirus disease‐2019 (COVID‐19) pandemic caused by severe acute
respiratory syndrome coronavirus‐2 (SARS‐CoV‐2) has already resulted in a huge setback …

Molecular mechanisms of eukaryotic pre-mRNA 3′ end processing regulation

S Millevoi, S Vagner - Nucleic acids research, 2010 - academic.oup.com
ABSTRACT Messenger RNA (mRNA) 3′ end formation is a nuclear process through which
all eukaryotic primary transcripts are endonucleolytically cleaved and most of them acquire a …

[HTML][HTML] TDP-43 binds heterogeneous nuclear ribonucleoprotein A/B through its C-terminal tail: an important region for the inhibition of cystic fibrosis transmembrane …

E Buratti, A Brindisi, M Giombi, S Tisminetzky… - Journal of Biological …, 2005 - ASBMB
TDP-43 is a highly conserved nuclear factor of yet unknown function that binds to ug-
repeated sequences and is responsible for cystic fibrosis transmembrane conductance …

Protein factors in pre-mRNA 3′-end processing

CR Mandel, Y Bai, L Tong - Cellular and Molecular Life Sciences, 2008 - Springer
Most eukaryotic mRNA precursors (premRNAs) must undergo extensive processing,
including cleavage and polyadenylation at the 3′-end. Processing at the 3′-end is …

Cleavage and polyadenylation: Ending the message expands gene regulation

J Neve, R Patel, Z Wang, A Louey, AM Furger - RNA biology, 2017 - Taylor & Francis
Cleavage and polyadenylation (pA) is a fundamental step that is required for the maturation
of primary protein encoding transcripts into functional mRNAs that can be exported from the …