The pyruvate dehydrogenase complexes: structure-based function and regulation

MS Patel, NS Nemeria, W Furey, F Jordan - Journal of Biological Chemistry, 2014 - ASBMB
The pyruvate dehydrogenase complexes (PDCs) from all known living organisms comprise
three principal catalytic components for their mission: E1 and E2 generate acetyl-coenzyme …

Reaction mechanisms of thiamin diphosphate enzymes: defining states of ionization and tautomerization of the cofactor at individual steps

NS Nemeria, S Chakraborty, A Balakrishnan… - The FEBS …, 2009 - Wiley Online Library
We summarize the currently available information regarding the state of ionization and
tautomerization of the 4′‐aminopyrimidine ring of the thiamine diphosphate on enzymes …

Structure and function of the catalytic domain of the dihydrolipoyl acetyltransferase component in Escherichia coli pyruvate dehydrogenase complex

J Wang, NS Nemeria, K Chandrasekhar… - Journal of Biological …, 2014 - ASBMB
The Escherichia coli pyruvate dehydrogenase complex (PDHc) catalyzing conversion of
pyruvate to acetyl-CoA comprises three components: E1p, E2p, and E3. The E2p is the five …

Thiamin diphosphate catalysis: enzymic and nonenzymic covalent intermediates

R Kluger, K Tittmann - Chemical reviews, 2008 - ACS Publications
The idea of “reasonableness” of organic reactions is based on recorded evidence of
reaction patterns. The logical patterns are organized based on structural and functional …

[PDF][PDF] Functional plasticity and allosteric regulation of α-ketoglutarate decarboxylase in central mycobacterial metabolism

T Wagner, M Bellinzoni, A Wehenkel, HM O'Hare… - Chemistry & biology, 2011 - cell.com
The α-ketoglutarate dehydrogenase (KDH) complex is a major regulatory point of aerobic
energy metabolism. Mycobacterium tuberculosis was reported to lack KDH activity, and the …

Sweet siblings with different faces: the mechanisms of FBP and F6P aldolase, transaldolase, transketolase and phosphoketolase revisited in light of recent structural …

K Tittmann - Bioorganic chemistry, 2014 - Elsevier
Nature has evolved different strategies for the reversible cleavage of ketose phosphosugars
as essential metabolic reactions in all domains of life. Prominent examples are the Schiff …

Observation of a stable carbene at the active site of a thiamin enzyme

D Meyer, P Neumann, R Ficner, K Tittmann - Nature chemical biology, 2013 - nature.com
Carbenes are highly reactive chemical compounds that are exploited as ligands in
organometallic chemistry and are powerful organic catalysts. They were postulated to occur …

Observation of Thiamin-Bound Intermediates and Microscopic Rate Constants for Their Interconversion on 1-Deoxy-d-xylulose 5-Phosphate Synthase: 600-Fold Rate …

H Patel, NS Nemeria, LA Brammer… - Journal of the …, 2012 - ACS Publications
The thiamin diphosphate (ThDP)-dependent enzyme 1-deoxy-d-xylulose 5-phosphate
(DXP) synthase carries out the condensation of pyruvate as a 2-hydroxyethyl donor with d …

1-Deoxy-D-xylulose 5-phosphate synthase catalyzes a novel random sequential mechanism

LA Brammer, JM Smith, H Wade, CF Meyers - Journal of Biological …, 2011 - ASBMB
Emerging resistance of human pathogens to anti-infective agents make it necessary to
develop new agents to treat infection. The methylerythritol phosphate pathway has been …

Sub-ångström-resolution crystallography reveals physical distortions that enhance reactivity of a covalent enzymatic intermediate

S Lüdtke, P Neumann, KM Erixon, F Leeper… - Nature …, 2013 - nature.com
It is recognized widely that enzymes promote reactions by providing a pathway that
proceeds through a transition state of lower energy. In principle, further rate enhancements …