Naturally occurring modified ribonucleosides
PJ McCown, A Ruszkowska, CN Kunkler… - Wiley …, 2020 - Wiley Online Library
The chemical identity of RNA molecules beyond the four standard ribonucleosides has
fascinated scientists since pseudouridine was characterized as the “fifth” ribonucleotide in …
fascinated scientists since pseudouridine was characterized as the “fifth” ribonucleotide in …
Functions of bacterial tRNA modifications: from ubiquity to diversity
V de Crécy-Lagard, M Jaroch - Trends in Microbiology, 2021 - cell.com
Modified nucleotides in tRNA are critical components of the translation apparatus, but their
importance in the process of translational regulation had until recently been greatly …
importance in the process of translational regulation had until recently been greatly …
MODOMICS: a database of RNA modification pathways—2013 update
MA Machnicka, K Milanowska… - Nucleic acids …, 2012 - academic.oup.com
MODOMICS is a database of RNA modifications that provides comprehensive information
concerning the chemical structures of modified ribonucleosides, their biosynthetic pathways …
concerning the chemical structures of modified ribonucleosides, their biosynthetic pathways …
[HTML][HTML] Methylated nucleosides in tRNA and tRNA methyltransferases
H Hori - Frontiers in genetics, 2014 - frontiersin.org
To date, more than 90 modified nucleosides have been found in tRNA and the biosynthetic
pathways of the majority of tRNA modifications include a methylation step (s). Recent studies …
pathways of the majority of tRNA modifications include a methylation step (s). Recent studies …
N 1-Methylpseudouridine substitution enhances the performance of synthetic mRNA switches in cells
Synthetic messenger RNA (mRNA) tools often use pseudouridine and 5-methyl cytidine as
substitutions for uridine and cytidine to avoid the immune response and cytotoxicity induced …
substitutions for uridine and cytidine to avoid the immune response and cytotoxicity induced …
[HTML][HTML] Tied up in knots: Untangling substrate recognition by the SPOUT methyltransferases
SE Strassler, IE Bowles, D Dey, JE Jackman… - Journal of Biological …, 2022 - ASBMB
The SpoU-TrmD (SPOUT) methyltransferase superfamily was designated when structural
similarity was identified between the transfer RNA–modifying enzymes TrmH (SpoU) and …
similarity was identified between the transfer RNA–modifying enzymes TrmH (SpoU) and …
[HTML][HTML] Biochemical functional predictions for protein structures of unknown or uncertain function
CL Mills, PJ Beuning, MJ Ondrechen - Computational and structural …, 2015 - Elsevier
With the exponential growth in the determination of protein sequences and structures via
genome sequencing and structural genomics efforts, there is a growing need for reliable …
genome sequencing and structural genomics efforts, there is a growing need for reliable …
RNA pseudouridine modification in plants
Y Niu, L Liu - Journal of Experimental Botany, 2023 - academic.oup.com
Pseudouridine is one of the well-known chemical modifications in various RNA species.
Current advances to detect pseudouridine show that the pseudouridine landscape is …
Current advances to detect pseudouridine show that the pseudouridine landscape is …
The tRNA methyltransferase TrmB is critical for Acinetobacter baumannii stress responses and pulmonary infection
JC McGuffey, CD Jackson-Litteken, G Di Venanzio… - Mbio, 2023 - Am Soc Microbiol
Successful pathogens must be able to adapt to a multitude of stressors imposed by their
host. Acinetobacter baumannii has emerged as a major global health threat due to its …
host. Acinetobacter baumannii has emerged as a major global health threat due to its …
Comparative patterns of modified nucleotides in individual tRNA species from a mesophilic and two thermophilic archaea
To improve and complete our knowledge of archaeal tRNA modification patterns, we have
identified and compared the modification pattern (type and location) in tRNAs of three very …
identified and compared the modification pattern (type and location) in tRNAs of three very …