Mutagenesis in rice: the basis for breeding a new super plant

VE Viana, C Pegoraro, C Busanello… - Frontiers in plant …, 2019 - frontiersin.org
The high selection pressure applied in rice breeding since its domestication thousands of
years ago has caused a narrowing in its genetic variability. Obtaining new rice cultivars …

The CRISPR/Cas revolution continues: from efficient gene editing for crop breeding to plant synthetic biology

J Kumlehn, J Pietralla, G Hensel… - Journal of Integrative …, 2018 - Wiley Online Library
Since the discovery that nucleases of the bacterial CRISPR (clustered regularly interspaced
palindromic repeat)‐associated (Cas) system can be used as easily programmable tools for …

The CRISPR/Cas system can be used as nuclease for in planta gene targeting and as paired nickases for directed mutagenesis in Arabidopsis resulting in heritable …

S Schiml, F Fauser, H Puchta - The Plant Journal, 2014 - Wiley Online Library
The CRISPR/C as nuclease is becoming a major tool for targeted mutagenesis in
eukaryotes by inducing double‐strand breaks (DSB s) at pre‐selected genomic sites that are …

Mutational signatures of non‐homologous and polymerase theta‐mediated end‐joining in embryonic stem cells

J Schimmel, H Kool, R van Schendel… - The EMBO journal, 2017 - embopress.org
Cells employ potentially mutagenic DNA repair mechanisms to avoid the detrimental effects
of chromosome breaks on cell survival. While classical non‐homologous end‐joining …

Genetic basis and detection of unintended effects in genetically modified crop plants

GS Ladics, A Bartholomaeus, P Bregitzer… - Transgenic …, 2015 - Springer
In January 2014, an international meeting sponsored by the International Life Sciences
Institute/Health and Environmental Sciences Institute and the Canadian Food Inspection …

Regulation of error-prone DNA double-strand break repair and its impact on genome evolution

T Hanscom, M McVey - Cells, 2020 - mdpi.com
Double-strand breaks are one of the most deleterious DNA lesions. Their repair via error-
prone mechanisms can promote mutagenesis, loss of genetic information, and deregulation …

Insertions and deletions: Computational methods, evolutionary dynamics, and biological applications

BD Redelings, I Holmes, G Lunter… - Molecular biology …, 2024 - academic.oup.com
Insertions and deletions constitute the second most important source of natural genomic
variation. Insertions and deletions make up to 25% of genomic variants in humans and are …

BRCA1-associated structural variations are a consequence of polymerase theta-mediated end-joining

JA Kamp, R Van Schendel, IW Dilweg… - Nature …, 2020 - nature.com
Failure to preserve the integrity of the genome is a hallmark of cancer. Recent studies have
revealed that loss of the capacity to repair DNA breaks via homologous recombination (HR) …

Graph-based pangenomics maximizes genotyping density and reveals structural impacts on fungal resistance in melon

JN Vaughn, SE Branham, B Abernathy… - Nature …, 2022 - nature.com
The genomic sequences segregating in experimental populations are often highly divergent
from the community reference and from one another. Such divergence is problematic under …

Small tandem DNA duplications result from CST-guided Pol α-primase action at DNA break termini

J Schimmel, N Muñoz-Subirana, H Kool… - Nature …, 2021 - nature.com
Small tandem duplications of DNA occur frequently in the human genome and are
implicated in the aetiology of certain human cancers. Recent studies have suggested that …