Mitochondrial genetics through the lens of single-cell multi-omics

L Nitsch, CA Lareau, LS Ludwig - Nature genetics, 2024 - nature.com
Mitochondria carry their own genetic information encoding for a subset of protein-coding
genes and translational machinery essential for cellular respiration and metabolism. Despite …

Profiling cell identity and tissue architecture with single-cell and spatial transcriptomics

GS Gulati, JP D'Silva, Y Liu, L Wang… - … Reviews Molecular Cell …, 2024 - nature.com
Single-cell transcriptomics has broadened our understanding of cellular diversity and gene
expression dynamics in healthy and diseased tissues. Recently, spatial transcriptomics has …

[HTML][HTML] Massively parallel base editing to map variant effects in human hematopoiesis

JD Martin-Rufino, N Castano, M Pang, EI Grody… - Cell, 2023 - cell.com
Systematic evaluation of the impact of genetic variants is critical for the study and treatment
of human physiology and disease. While specific mutations can be introduced by genome …

Integrative genotyping of cancer and immune phenotypes by long-read sequencing

L Penter, M Borji, A Nagler, H Lyu, WS Lu… - Nature …, 2024 - nature.com
Single-cell transcriptomics has become the definitive method for classifying cell types and
states, and can be augmented with genotype information to improve cell lineage …

Single-cell landscape of innate and acquired drug resistance in acute myeloid leukemia

R Wegmann, X Bonilla, R Casanova, S Chevrier… - Nature …, 2024 - nature.com
Deep single-cell multi-omic profiling offers a promising approach to understand and
overcome drug resistance in relapsed or refractory (rr) acute myeloid leukemia (AML). Here …

Targeting cancer cell dormancy

J Agudo, JA Aguirre-Ghiso, M Bhatia… - Nature Reviews …, 2024 - nature.com
The field of tumour dormancy, originally defined as a clinical phenomenon of late recurrence
after a long, apparently disease-free period, has seen significant advances that now allow …

Oncogene-induced TIM-3 ligand expression dictates susceptibility to anti–TIM-3 therapy in mice

N Talvard-Balland, LM Braun, KO Dixon, M Zwick… - The Journal of Clinical …, 2024 - jci.org
Leukemia relapse is a major cause of death after allogeneic hematopoietic cell
transplantation (allo-HCT). We tested the potential of targeting T cell (Tc) immunoglobulin …

A single-cell taxonomy predicts inflammatory niche remodeling to drive tissue failure and outcome in human AML

L Chen, E Pronk, C van Dijk, Y Bian, J Feyen… - Blood Cancer …, 2023 - AACR
Cancer initiation is orchestrated by an interplay between tumor-initiating cells and their
stromal/immune environment. Here, by adapted single-cell RNA sequencing, we decipher …

Extracting, filtering and simulating cellular barcodes using CellBarcode tools

W Sun, M Perkins, M Huyghe, MM Faraldo… - Nature Computational …, 2024 - nature.com
Identifying true DNA cellular barcodes among polymerase chain reaction and sequencing
errors is challenging. Current tools are restricted in the diversity of barcode types supported …

Application of single-cell sequencing to the research of tumor microenvironment

S Chen, Z Zhou, Y Li, Y Du, G Chen - Frontiers in Immunology, 2023 - frontiersin.org
Single-cell sequencing is a technique for detecting and analyzing genomes, transcriptomes,
and epigenomes at the single-cell level, which can detect cellular heterogeneity lost in …