Mitochondrial genetics through the lens of single-cell multi-omics
Mitochondria carry their own genetic information encoding for a subset of protein-coding
genes and translational machinery essential for cellular respiration and metabolism. Despite …
genes and translational machinery essential for cellular respiration and metabolism. Despite …
Profiling cell identity and tissue architecture with single-cell and spatial transcriptomics
Single-cell transcriptomics has broadened our understanding of cellular diversity and gene
expression dynamics in healthy and diseased tissues. Recently, spatial transcriptomics has …
expression dynamics in healthy and diseased tissues. Recently, spatial transcriptomics has …
[HTML][HTML] Massively parallel base editing to map variant effects in human hematopoiesis
JD Martin-Rufino, N Castano, M Pang, EI Grody… - Cell, 2023 - cell.com
Systematic evaluation of the impact of genetic variants is critical for the study and treatment
of human physiology and disease. While specific mutations can be introduced by genome …
of human physiology and disease. While specific mutations can be introduced by genome …
Integrative genotyping of cancer and immune phenotypes by long-read sequencing
Single-cell transcriptomics has become the definitive method for classifying cell types and
states, and can be augmented with genotype information to improve cell lineage …
states, and can be augmented with genotype information to improve cell lineage …
Single-cell landscape of innate and acquired drug resistance in acute myeloid leukemia
Deep single-cell multi-omic profiling offers a promising approach to understand and
overcome drug resistance in relapsed or refractory (rr) acute myeloid leukemia (AML). Here …
overcome drug resistance in relapsed or refractory (rr) acute myeloid leukemia (AML). Here …
Targeting cancer cell dormancy
The field of tumour dormancy, originally defined as a clinical phenomenon of late recurrence
after a long, apparently disease-free period, has seen significant advances that now allow …
after a long, apparently disease-free period, has seen significant advances that now allow …
Oncogene-induced TIM-3 ligand expression dictates susceptibility to anti–TIM-3 therapy in mice
N Talvard-Balland, LM Braun, KO Dixon, M Zwick… - The Journal of Clinical …, 2024 - jci.org
Leukemia relapse is a major cause of death after allogeneic hematopoietic cell
transplantation (allo-HCT). We tested the potential of targeting T cell (Tc) immunoglobulin …
transplantation (allo-HCT). We tested the potential of targeting T cell (Tc) immunoglobulin …
A single-cell taxonomy predicts inflammatory niche remodeling to drive tissue failure and outcome in human AML
L Chen, E Pronk, C van Dijk, Y Bian, J Feyen… - Blood Cancer …, 2023 - AACR
Cancer initiation is orchestrated by an interplay between tumor-initiating cells and their
stromal/immune environment. Here, by adapted single-cell RNA sequencing, we decipher …
stromal/immune environment. Here, by adapted single-cell RNA sequencing, we decipher …
Extracting, filtering and simulating cellular barcodes using CellBarcode tools
Identifying true DNA cellular barcodes among polymerase chain reaction and sequencing
errors is challenging. Current tools are restricted in the diversity of barcode types supported …
errors is challenging. Current tools are restricted in the diversity of barcode types supported …
Application of single-cell sequencing to the research of tumor microenvironment
S Chen, Z Zhou, Y Li, Y Du, G Chen - Frontiers in Immunology, 2023 - frontiersin.org
Single-cell sequencing is a technique for detecting and analyzing genomes, transcriptomes,
and epigenomes at the single-cell level, which can detect cellular heterogeneity lost in …
and epigenomes at the single-cell level, which can detect cellular heterogeneity lost in …