Evaluation of serverless computing for scalable execution of a joint variant calling workflow

A John, K Muenzen, K Ausmees - Plos one, 2021 - journals.plos.org
Advances in whole-genome sequencing have greatly reduced the cost and time of obtaining
raw genetic information, but the computational requirements of analysis remain a challenge …

Singleton variants dominate the genetic architecture of human gene expression

RD Hernandez, LH Uricchio, K Hartman, C Ye, A Dahl… - BioRxiv, 2017 - biorxiv.org
The vast majority of human mutations have minor allele frequencies (MAF) under 1%, with
the plurality observed only once (ie,“singletons”). While Mendelian diseases are …

The application of deep learning for the classification of correct and incorrect SNP genotypes from whole-genome DNA sequencing pipelines

K Kotlarz, M Mielczarek, T Suchocki, B Czech… - Journal of Applied …, 2020 - Springer
A downside of next-generation sequencing technology is the high technical error rate. We
built a tool, which uses array-based genotype information to classify next-generation …

Time-Series Expression Profile Analysis of Post-Traumatic Joint Contracture in Rats at the Early Stages of the Healing Process

Y Zhang, Z Wu, S Lu, M Lin, X Yue… - Journal of Inflammation …, 2023 - Taylor & Francis
Objective This study aimed to characterize the gene expression profile at the early stages of
the healing process of post-traumatic joint contracture (PTJC). Methods Twelve rats were …

Evaluating and improving next generation sequencing performance in the absence of gold standard

Y Zhai - 2023 - theses.hal.science
Evaluating next-generation sequencing (NGS) performance suffers frequently from the
absence of gold standard. Without gold standard, researchers often carry out replicates from …

Évaluation de l'imputation des données génétiques Canadiennes-Françaises

J Pelletier - 2022 - papyrus.bib.umontreal.ca
L'imputation est désormais un outil essentiel dans l'analyse des études d'association à
l'échelle du génome, permettant l'estimation de génotypes à des positions variables du …

Whole-genome Sequencing: From Samples to Variants and Beyond

JM Lorenzo-Salazar, A Muñnoz-Barrera… - Bioinformatics and …, 2021 - taylorfrancis.com
This chapter presents an outline of the basic wet lab procedures to prepare the sample's
DNA for whole-genome sequencing (WGS). It follows an overview and benefits of the …

[引用][C] ΜΕΘΟΔΟΙ ΚΑΙ ΕΦΑΡΜΟΓΕΣ NGS ΣΤΗΝ ΕΝΤΕΡΙΚΗ ΜΙΚΡΟΧΛΩΡΙΔΑ ΚΑΙ ΣΤΟΝ ΚΑΡΚΙΝΟ ΤΟΥ ΠΑΧΕΟΣ ΕΝΤΕΡΟΥ

Α ΜΟΥΧΤΑΡΗ-ΞΥΛΟΓΙΑΝΝΗ

[引用][C] Genetics of asthma

K Barnes, PJ Barnes, BA Raby, H Hollingsworth - Up to Date. Obtenido de Up to Date …, 2015