Approximate Bayesian computation (ABC) in practice
Understanding the forces that influence natural variation within and among populations has
been a major objective of evolutionary biologists for decades. Motivated by the growth in …
been a major objective of evolutionary biologists for decades. Motivated by the growth in …
Of glaciers and refugia: a decade of study sheds new light on the phylogeography of northwestern North America
Glacial cycles have played a dominant role in shaping the genetic structure and distribution
of biota in northwestern North America. The two major ice age refugia of Beringia and the …
of biota in northwestern North America. The two major ice age refugia of Beringia and the …
[图书][B] Bayesian evolutionary analysis with BEAST
AJ Drummond, RR Bouckaert - 2015 - books.google.com
What are the models used in phylogenetic analysis and what exactly is involved in Bayesian
evolutionary analysis using Markov chain Monte Carlo (MCMC) methods? How can you …
evolutionary analysis using Markov chain Monte Carlo (MCMC) methods? How can you …
Approximate bayesian computation
M Sunnåker, AG Busetto, E Numminen… - PLoS computational …, 2013 - journals.plos.org
Approximate Bayesian computation (ABC) constitutes a class of computational methods
rooted in Bayesian statistics. In all model-based statistical inference, the likelihood function …
rooted in Bayesian statistics. In all model-based statistical inference, the likelihood function …
Hierarchical and spatially explicit clustering of DNA sequences with BAPS software
Phylogeographical analyses have become commonplace for a myriad of organisms with the
advent of cheap DNA sequencing technologies. Bayesian model-based clustering is a …
advent of cheap DNA sequencing technologies. Bayesian model-based clustering is a …
Approximate Bayesian computational methods
Abstract Approximate Bayesian Computation (ABC) methods, also known as likelihood-free
techniques, have appeared in the past ten years as the most satisfactory approach to …
techniques, have appeared in the past ten years as the most satisfactory approach to …
An adaptive sequential Monte Carlo method for approximate Bayesian computation
Approximate Bayesian computation (ABC) is a popular approach to address inference
problems where the likelihood function is intractable, or expensive to calculate. To improve …
problems where the likelihood function is intractable, or expensive to calculate. To improve …
The performance of phylogenetic algorithms in estimating haplotype genealogies with migration
W Salzburger, GB Ewing, A Von Haeseler - Molecular ecology, 2011 - Wiley Online Library
Genealogies estimated from haplotypic genetic data play a prominent role in various
biological disciplines in general and in phylogenetics, population genetics and …
biological disciplines in general and in phylogenetics, population genetics and …
Recent progress and challenges in population genetics of polyploid organisms: an overview of current state‐of‐the‐art molecular and statistical tools
Despite the importance of polyploidy and the increasing availability of new genomic data,
there remain important gaps in our knowledge of polyploid population genetics. These gaps …
there remain important gaps in our knowledge of polyploid population genetics. These gaps …
New routes to phylogeography: a Bayesian structured coalescent approximation
Phylogeographic methods aim to infer migration trends and the history of sampled lineages
from genetic data. Applications of phylogeography are broad, and in the context of …
from genetic data. Applications of phylogeography are broad, and in the context of …