Approximate Bayesian computation (ABC) in practice

K Csilléry, MGB Blum, OE Gaggiotti… - Trends in ecology & …, 2010 - cell.com
Understanding the forces that influence natural variation within and among populations has
been a major objective of evolutionary biologists for decades. Motivated by the growth in …

Of glaciers and refugia: a decade of study sheds new light on the phylogeography of northwestern North America

ABA Shafer, CI Cullingham, SD Côté… - Molecular …, 2010 - Wiley Online Library
Glacial cycles have played a dominant role in shaping the genetic structure and distribution
of biota in northwestern North America. The two major ice age refugia of Beringia and the …

[图书][B] Bayesian evolutionary analysis with BEAST

AJ Drummond, RR Bouckaert - 2015 - books.google.com
What are the models used in phylogenetic analysis and what exactly is involved in Bayesian
evolutionary analysis using Markov chain Monte Carlo (MCMC) methods? How can you …

Approximate bayesian computation

M Sunnåker, AG Busetto, E Numminen… - PLoS computational …, 2013 - journals.plos.org
Approximate Bayesian computation (ABC) constitutes a class of computational methods
rooted in Bayesian statistics. In all model-based statistical inference, the likelihood function …

Hierarchical and spatially explicit clustering of DNA sequences with BAPS software

L Cheng, TR Connor, J Sirén… - Molecular biology …, 2013 - academic.oup.com
Phylogeographical analyses have become commonplace for a myriad of organisms with the
advent of cheap DNA sequencing technologies. Bayesian model-based clustering is a …

Approximate Bayesian computational methods

JM Marin, P Pudlo, CP Robert, RJ Ryder - Statistics and computing, 2012 - Springer
Abstract Approximate Bayesian Computation (ABC) methods, also known as likelihood-free
techniques, have appeared in the past ten years as the most satisfactory approach to …

An adaptive sequential Monte Carlo method for approximate Bayesian computation

P Del Moral, A Doucet, A Jasra - Statistics and computing, 2012 - Springer
Approximate Bayesian computation (ABC) is a popular approach to address inference
problems where the likelihood function is intractable, or expensive to calculate. To improve …

The performance of phylogenetic algorithms in estimating haplotype genealogies with migration

W Salzburger, GB Ewing, A Von Haeseler - Molecular ecology, 2011 - Wiley Online Library
Genealogies estimated from haplotypic genetic data play a prominent role in various
biological disciplines in general and in phylogenetics, population genetics and …

Recent progress and challenges in population genetics of polyploid organisms: an overview of current state‐of‐the‐art molecular and statistical tools

F Dufresne, M Stift, R Vergilino, BK Mable - Molecular ecology, 2014 - Wiley Online Library
Despite the importance of polyploidy and the increasing availability of new genomic data,
there remain important gaps in our knowledge of polyploid population genetics. These gaps …

New routes to phylogeography: a Bayesian structured coalescent approximation

N De Maio, CH Wu, KM O'Reilly, D Wilson - PLoS genetics, 2015 - journals.plos.org
Phylogeographic methods aim to infer migration trends and the history of sampled lineages
from genetic data. Applications of phylogeography are broad, and in the context of …