Coordinating cell proliferation and differentiation: Antagonism between cell cycle regulators and cell type-specific gene expression
S Ruijtenberg, S van den Heuvel - Cell cycle, 2016 - Taylor & Francis
Cell proliferation and differentiation show a remarkable inverse relationship. Precursor cells
continue division before acquiring a fully differentiated state, while terminal differentiation …
continue division before acquiring a fully differentiated state, while terminal differentiation …
H3K9me3-dependent heterochromatin: barrier to cell fate changes
Establishing and maintaining cell identity depends on the proper regulation of gene
expression, as specified by transcription factors and reinforced by epigenetic mechanisms …
expression, as specified by transcription factors and reinforced by epigenetic mechanisms …
[HTML][HTML] Chromatin fibers are formed by heterogeneous groups of nucleosomes in vivo
Nucleosomes help structure chromosomes by compacting DNA into fibers. To gain insight
into how nucleosomes are arranged in vivo, we combined quantitative super-resolution …
into how nucleosomes are arranged in vivo, we combined quantitative super-resolution …
Single-cell full-length total RNA sequencing uncovers dynamics of recursive splicing and enhancer RNAs
T Hayashi, H Ozaki, Y Sasagawa, M Umeda… - Nature …, 2018 - nature.com
Total RNA sequencing has been used to reveal poly (A) and non-poly (A) RNA expression,
RNA processing and enhancer activity. To date, no method for full-length total RNA …
RNA processing and enhancer activity. To date, no method for full-length total RNA …
Regulation of long non-coding RNAs and genome dynamics by the RNA surveillance machinery
L Nair, H Chung, U Basu - Nature reviews Molecular cell biology, 2020 - nature.com
Much of the mammalian genome is transcribed, generating long non-coding RNAs
(lncRNAs) that can undergo post-transcriptional surveillance whereby only a subset of the …
(lncRNAs) that can undergo post-transcriptional surveillance whereby only a subset of the …
Chromatin modifiers and remodellers: regulators of cellular differentiation
T Chen, SYR Dent - Nature Reviews Genetics, 2014 - nature.com
Cellular differentiation is, by definition, epigenetic. Genome-wide profiling of pluripotent cells
and differentiated cells suggests global chromatin remodelling during differentiation, which …
and differentiated cells suggests global chromatin remodelling during differentiation, which …
Next-generation proteomics: towards an integrative view of proteome dynamics
Next-generation sequencing allows the analysis of genomes, including those representing
disease states. However, the causes of most disorders are multifactorial, and systems-level …
disease states. However, the causes of most disorders are multifactorial, and systems-level …
[HTML][HTML] Long noncoding RNAs with enhancer-like function in human cells
While the long noncoding RNAs (ncRNAs) constitute a large portion of the mammalian
transcriptome, their biological functions has remained elusive. A few long ncRNAs that have …
transcriptome, their biological functions has remained elusive. A few long ncRNAs that have …
[HTML][HTML] Regulatory principles of pluripotency: from the ground state up
JA Hackett, MA Surani - Cell stem cell, 2014 - cell.com
Pluripotency is the remarkable capacity of a single cell to engender all the specialized cell
types of an adult organism. This property can be captured indefinitely through derivation of …
types of an adult organism. This property can be captured indefinitely through derivation of …
[HTML][HTML] The transcriptional and epigenomic foundations of ground state pluripotency
H Marks, T Kalkan, R Menafra, S Denissov, K Jones… - Cell, 2012 - cell.com
Mouse embryonic stem (ES) cells grown in serum exhibit greater heterogeneity in
morphology and expression of pluripotency factors than ES cells cultured in defined medium …
morphology and expression of pluripotency factors than ES cells cultured in defined medium …