Coordinating cell proliferation and differentiation: Antagonism between cell cycle regulators and cell type-specific gene expression

S Ruijtenberg, S van den Heuvel - Cell cycle, 2016 - Taylor & Francis
Cell proliferation and differentiation show a remarkable inverse relationship. Precursor cells
continue division before acquiring a fully differentiated state, while terminal differentiation …

H3K9me3-dependent heterochromatin: barrier to cell fate changes

JS Becker, D Nicetto, KS Zaret - Trends in Genetics, 2016 - cell.com
Establishing and maintaining cell identity depends on the proper regulation of gene
expression, as specified by transcription factors and reinforced by epigenetic mechanisms …

[HTML][HTML] Chromatin fibers are formed by heterogeneous groups of nucleosomes in vivo

MA Ricci, C Manzo, MF García-Parajo, M Lakadamyali… - Cell, 2015 - cell.com
Nucleosomes help structure chromosomes by compacting DNA into fibers. To gain insight
into how nucleosomes are arranged in vivo, we combined quantitative super-resolution …

Single-cell full-length total RNA sequencing uncovers dynamics of recursive splicing and enhancer RNAs

T Hayashi, H Ozaki, Y Sasagawa, M Umeda… - Nature …, 2018 - nature.com
Total RNA sequencing has been used to reveal poly (A) and non-poly (A) RNA expression,
RNA processing and enhancer activity. To date, no method for full-length total RNA …

Regulation of long non-coding RNAs and genome dynamics by the RNA surveillance machinery

L Nair, H Chung, U Basu - Nature reviews Molecular cell biology, 2020 - nature.com
Much of the mammalian genome is transcribed, generating long non-coding RNAs
(lncRNAs) that can undergo post-transcriptional surveillance whereby only a subset of the …

Chromatin modifiers and remodellers: regulators of cellular differentiation

T Chen, SYR Dent - Nature Reviews Genetics, 2014 - nature.com
Cellular differentiation is, by definition, epigenetic. Genome-wide profiling of pluripotent cells
and differentiated cells suggests global chromatin remodelling during differentiation, which …

Next-generation proteomics: towards an integrative view of proteome dynamics

AFM Altelaar, J Munoz, AJR Heck - Nature Reviews Genetics, 2013 - nature.com
Next-generation sequencing allows the analysis of genomes, including those representing
disease states. However, the causes of most disorders are multifactorial, and systems-level …

[HTML][HTML] Long noncoding RNAs with enhancer-like function in human cells

UA Ørom, T Derrien, M Beringer, K Gumireddy… - Cell, 2010 - cell.com
While the long noncoding RNAs (ncRNAs) constitute a large portion of the mammalian
transcriptome, their biological functions has remained elusive. A few long ncRNAs that have …

[HTML][HTML] Regulatory principles of pluripotency: from the ground state up

JA Hackett, MA Surani - Cell stem cell, 2014 - cell.com
Pluripotency is the remarkable capacity of a single cell to engender all the specialized cell
types of an adult organism. This property can be captured indefinitely through derivation of …

[HTML][HTML] The transcriptional and epigenomic foundations of ground state pluripotency

H Marks, T Kalkan, R Menafra, S Denissov, K Jones… - Cell, 2012 - cell.com
Mouse embryonic stem (ES) cells grown in serum exhibit greater heterogeneity in
morphology and expression of pluripotency factors than ES cells cultured in defined medium …