Visualization of biomolecular structures: State of the art revisited

B Kozlíková, M Krone, M Falk, N Lindow… - Computer Graphics …, 2017 - Wiley Online Library
Structural properties of molecules are of primary concern in many fields. This report provides
a comprehensive overview on techniques that have been developed in the fields of …

Visualization of biomolecular structures: State of the art

B Kozlikova, M Krone, M Falk, N Lindow, M Baaden… - 2015 - opus4.kobv.de
Structural properties of molecules are of primary concern in many fields. This report provides
a comprehensive overview on techniques that have been developed in the fields of …

Molecular simulations and visualization: introduction and overview

JD Hirst, DR Glowacki, M Baaden - Faraday discussions, 2014 - pubs.rsc.org
Here we provide an introduction and overview of current progress in the field of molecular
simulation and visualization, touching on the following topics:(1) virtual and augmented …

Mathematical analysis and calculation of molecular surfaces

C Quan, B Stamm - Journal of Computational Physics, 2016 - Elsevier
In this article we derive a complete characterization of the Solvent Excluded Surface (SES)
for molecular systems including a complete characterization of singularities of the surface …

Continuous levels‐of‐detail and visual abstraction for seamless molecular visualization

J Parulek, D Jönsson, T Ropinski… - Computer Graphics …, 2014 - Wiley Online Library
Molecular visualization is often challenged with rendering of large molecular structures in
real time. We introduce a novel approach that enables us to show even large protein …

Interactive gpu-based generation of solvent-excluded surfaces

P Hermosilla, M Krone, V Guallar, PP Vázquez… - The Visual …, 2017 - Springer
The solvent-excluded surface (SES) is a popular molecular representation that gives the
boundary of the molecular volume with respect to a specific solvent. SESs depict which …

Meshing molecular surfaces based on analytical implicit representation

C Quan, B Stamm - Journal of molecular graphics and modelling, 2017 - Elsevier
We develop an algorithm for meshing molecular surfaces that is based on patch-wise
meshing using an advancing-front method adapted to the particular case of molecular …

Visual cavity analysis in molecular simulations

J Parulek, C Turkay, N Reuter, I Viola - BMC bioinformatics, 2013 - Springer
Molecular surfaces provide a useful mean for analyzing interactions between biomolecules;
such as identification and characterization of ligand binding sites to a host macromolecule …

[PDF][PDF] Rendering Molecular Surfaces using Order-Independent Transparency.

D Kauker, M Krone, A Panagiotidis, G Reina… - EGPGV …, 2013 - diglib.eg.org
In this paper we present a technique for interactively rendering transparent molecular
surfaces. We use Puxels, our implementation of per-pixel linked lists for order-independent …

Dynamic Visibility‐Driven Molecular Surfaces

S Bruckner - Computer Graphics Forum, 2019 - Wiley Online Library
Molecular surface representations are an important tool for the visual analysis of molecular
structure and function. In this paper, we present a novel method for the visualization of …