High-throughput phenotyping for crop improvement in the genomics era
Tremendous progress has been made with continually expanding genomics technologies to
unravel and understand crop genomes. However, the impact of genomics data on crop …
unravel and understand crop genomes. However, the impact of genomics data on crop …
Genotyping‐by‐sequencing approaches to characterize crop genomes: choosing the right tool for the right application
In the last decade, the revolution in sequencing technologies has deeply impacted crop
genotyping practice. New methods allowing rapid, high‐throughput genotyping of entire …
genotyping practice. New methods allowing rapid, high‐throughput genotyping of entire …
Improved pea reference genome and pan-genome highlight genomic features and evolutionary characteristics
Complete and accurate reference genomes and annotations provide fundamental resources
for functional genomics and crop breeding. Here we report a de novo assembly and …
for functional genomics and crop breeding. Here we report a de novo assembly and …
Extensive intraspecific gene order and gene structural variations between Mo17 and other maize genomes
Maize is an important crop with a high level of genome diversity and heterosis. The genome
sequence of a typical female line, B73, was previously released. Here, we report a de novo …
sequence of a typical female line, B73, was previously released. Here, we report a de novo …
TASSEL-GBS: a high capacity genotyping by sequencing analysis pipeline
JC Glaubitz, TM Casstevens, F Lu, J Harriman… - PloS one, 2014 - journals.plos.org
Genotyping by sequencing (GBS) is a next generation sequencing based method that takes
advantage of reduced representation to enable high throughput genotyping of large …
advantage of reduced representation to enable high throughput genotyping of large …
The pangenome of hexaploid bread wheat
There is an increasing understanding that variation in gene presence–absence plays an
important role in the heritability of agronomic traits; however, there have been relatively few …
important role in the heritability of agronomic traits; however, there have been relatively few …
[HTML][HTML] High-throughput SNP genotyping to accelerate crop improvement
MJ Thomson - Plant Breeding and Biotechnology, 2014 - plantbreedbio.org
Recent advances in next-generation sequencing (NGS) and single nucleotide
polymorphism (SNP) genotyping promise to greatly accelerate crop improvement if properly …
polymorphism (SNP) genotyping promise to greatly accelerate crop improvement if properly …
Dissecting the phenotypic components of crop plant growth and drought responses based on high-throughput image analysis
Significantly improved crop varieties are urgently needed to feed the rapidly growing human
population under changing climates. While genome sequence information and excellent …
population under changing climates. While genome sequence information and excellent …
Systematics, diversity, genetics, and evolution of wild and cultivated potatoes
The common potato, Solanum tuberosum L., is the third most important food crop and is
grown and consumed worldwide. Indigenous cultivated (landrace) potatoes and wild potato …
grown and consumed worldwide. Indigenous cultivated (landrace) potatoes and wild potato …
Food legumes and rising temperatures: effects, adaptive functional mechanisms specific to reproductive growth stage and strategies to improve heat tolerance
Ambient temperatures are predicted to rise in the future owing to several reasons associated
with global climate changes. These temperature increases can result in heat stress-a severe …
with global climate changes. These temperature increases can result in heat stress-a severe …